{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T06:40:48Z","timestamp":1761892848105,"version":"3.37.0"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"19","license":[{"start":{"date-parts":[[2016,10,1]],"date-time":"2016-10-01T00:00:00Z","timestamp":1475280000000},"content-version":"vor","delay-in-days":2616,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Summary: Genoscape is an open-source Cytoscape plug-in that visually integrates gene expression data sets from GenoScript, a transcriptomic database, and KEGG pathways into Cytoscape networks. The generated visualisation highlights gene expression changes and their statistical significance. The plug-in also allows one to browse GenoScript or import transcriptomic data from other sources through tab-separated text files. Genoscape has been successfully used by researchers to investigate the results of gene expression profiling experiments.<\/jats:p><jats:p>Availability: Genoscape is an open-source software freely available from the Genoscape webpage (http:\/\/www.pasteur.fr\/recherche\/unites\/Gim\/genoscape\/). Installation instructions and tutorial can also be found at this URL.<\/jats:p><jats:p>Contact: \u00a0Mathieu.clement-ziza@biotec.tu-dresden.de; sandrine.rousseau@pasteur.fr<\/jats:p><jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp464","type":"journal-article","created":{"date-parts":[[2009,8,5]],"date-time":"2009-08-05T00:13:27Z","timestamp":1249431207000},"page":"2617-2618","source":"Crossref","is-referenced-by-count":10,"title":["Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks"],"prefix":"10.1093","volume":"25","author":[{"given":"Mathieu","family":"Cl\u00e9ment-Ziza","sequence":"first","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"},{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"}]},{"given":"Christophe","family":"Malabat","sequence":"additional","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"}]},{"given":"Christian","family":"Weber","sequence":"additional","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"}]},{"given":"Ivan","family":"Moszer","sequence":"additional","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"}]},{"given":"Tero","family":"Aittokallio","sequence":"additional","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"}]},{"given":"Catherine","family":"Letondal","sequence":"additional","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, Dresden, Germany, 2INSERM U-781, Universit\u00e9 Ren\u00e9-Descartes, H\u00f4pital Necker-Enfants Malades, 3Institut Pasteur, Unit\u00e9 de G\u00e9n\u00e9tique des Interactions Macromol\u00e9culaires, CNRS, URA2171, 4Institut Pasteur, INSERM U786, Biologie Cellulaire du Parasitisme, 5Institut Pasteur, Plate-Forme Int\u00e9gration et Analyse G\u00e9nomiques, 6Institut Pasteur, Unit\u00e9 de Biologie Syst\u00e9mique and 7Institut Pasteur, P\u00f4le Informatique, Paris, France"}]},{"given":"Sandrine","family":"Rousseau","sequence":"additional","affiliation":[{"name":"1 Biotechnology Center, TU Dresden, 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