{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,5]],"date-time":"2026-04-05T19:24:23Z","timestamp":1775417063798,"version":"3.50.1"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"20","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,10,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Since the middle of the 90s, mass spectrometry has evolved into an almost indispensable tool in structural studies on an ever-growing variety of (bio-)polymers, of which proteins, sugars and nucleic acids are the most prominent. Since the first public release of massXpert, the advances of mass spectrometry have motivated continuous and thorough maintenance of that software, in the form of two full software rewrites, culminating with massXpert 2, which we describe in this report. We shall describe the profound changes in massXpert that were performed so as to keep up with the technical advances in mass spectrometry since a decade.<\/jats:p>\n               <jats:p>Availability: The massXpert 2 software is an open source and free software project hosted at http:\/\/www.massxpert.org.<\/jats:p>\n               <jats:p>Contact: \u00a0rusconi@mnhn.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp504","type":"journal-article","created":{"date-parts":[[2009,9,10]],"date-time":"2009-09-10T00:26:36Z","timestamp":1252542396000},"page":"2741-2742","source":"Crossref","is-referenced-by-count":18,"title":["<i>massXpert 2<\/i>: a cross-platform software environment for polymer chemistry modelling and simulation\/analysis of mass spectrometric data"],"prefix":"10.1093","volume":"25","author":[{"given":"Filippo","family":"Rusconi","sequence":"first","affiliation":[{"name":"Laboratoire de biophysique, Mus\u00e9um national d'Histoire naturelle, CNRS UMR7196 - INSERM U565 - MNHN USM0503; 57, rue Cuvier \u2013 Case postale 26 \u2013 F-75231 Paris Cedex 05 \u2013 France"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2009,9,9]]},"reference":[{"key":"2023013112131817600_B1","doi-asserted-by":"crossref","first-page":"644","DOI":"10.1093\/bioinformatics\/18.4.644","article-title":"Desktop prediction\/analysis of mass spectrometric data in proteomic projects by using massXpert","volume":"18","author":"Rusconi","year":"2002","journal-title":"Bioinformatics"},{"key":"2023013112131817600_B2","article-title":"Useful mass spectrometry programs freely available on the internet","volume-title":"Mass Spectrometry Data Analysis in Proteomics.","author":"Matthiesen","year":"2008"},{"key":"2023013112131817600_B3","doi-asserted-by":"crossref","first-page":"905","DOI":"10.1002\/rcm.3444","article-title":"mMass data miner: an open source alternative for mass spectrometric data analysis","volume":"22","author":"Strohalm","year":"2008","journal-title":"Rapid Commun. Mass Spec."},{"key":"2023013112131817600_B4","doi-asserted-by":"crossref","first-page":"226","DOI":"10.1186\/1471-2105-7-226","article-title":"GNU polyxmass: a software framework for mass spectrometric simulations of linear (bio-)polymeric analytes","volume":"7","author":"Rusconi","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023013112131817600_B5","doi-asserted-by":"crossref","first-page":"668","DOI":"10.1126\/science.101.2635.668","article-title":"Crystallization of a trypsin inhibitor from soybean","volume":"101","author":"Kunitz","year":"1945","journal-title":"Science"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/20\/2741\/48994955\/bioinformatics_25_20_2741.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/20\/2741\/48994955\/bioinformatics_25_20_2741.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T18:42:23Z","timestamp":1675190543000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/25\/20\/2741\/194220"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,9,9]]},"references-count":5,"journal-issue":{"issue":"20","published-print":{"date-parts":[[2009,10,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btp504","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2009,10,15]]},"published":{"date-parts":[[2009,9,9]]}}}