{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,12]],"date-time":"2025-12-12T12:58:58Z","timestamp":1765544338155},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Methods to automatically integrate sequence information with physical and genetic maps are scarce. The Locus Lookup tool enables researchers to define windows of genomic sequence likely to contain loci of interest where only genetic or physical mapping associations are reported. Using the Locus Lookup tool, researchers will be able to locate specific genes more efficiently that will ultimately help them develop a better maize plant. With the availability of the well-documented source code, the tool can be easily adapted to other biological systems.<\/jats:p>\n               <jats:p>Availability: The Locus Lookup tool is available on the web at http:\/\/maizegdb.org\/cgi-bin\/locus_lookup.cgi. It is implemented in PHP, Oracle and Apache, with all major browsers supported. Source code is freely available for download at http:\/\/ftp.maizegdb.org\/open_source\/locus_lookup\/.<\/jats:p>\n               <jats:p>Contact: \u00a0taner.sen@ars.usda.gov<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp556","type":"journal-article","created":{"date-parts":[[2010,2,2]],"date-time":"2010-02-02T16:19:45Z","timestamp":1265127585000},"page":"434-436","source":"Crossref","is-referenced-by-count":68,"title":["The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps"],"prefix":"10.1093","volume":"26","author":[{"given":"Carson M.","family":"Andorf","sequence":"first","affiliation":[{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"}]},{"given":"Carolyn J.","family":"Lawrence","sequence":"additional","affiliation":[{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"},{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"}]},{"given":"Lisa C.","family":"Harper","sequence":"additional","affiliation":[{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"},{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"}]},{"given":"Mary L.","family":"Schaeffer","sequence":"additional","affiliation":[{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"},{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"}]},{"given":"Darwin A.","family":"Campbell","sequence":"additional","affiliation":[{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"}]},{"given":"Taner Z.","family":"Sen","sequence":"additional","affiliation":[{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"},{"name":"1 US Department of Agriculture \u2013 Agricultural Research Service, Corn Insects and Crop Genetics Research Unit, 2 Department of Genetics, Development and Cell Biology; Bioinformatics and Computational Biology Program, Iowa State University, Ames, IA 50011, 3 US Department of Agriculture \u2013 Agricultural Research Service, Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, 4 Department of Molecular and Biology, University of California Berkeley, Berkeley, CA 94720, 5 US Department of Agriculture \u2013 Agricultural Research Service, Plant Genetics Research Unit and 6 Division of Plant Sciences, University of Missouri Columbia, Columbia, MO 65211, USA"}]}],"member":"286","published-online":{"date-parts":[[2010,2,1]]},"reference":[{"key":"2023012511003701400_B1","doi-asserted-by":"crossref","first-page":"297","DOI":"10.1016\/S0167-7799(99)01326-8","article-title":"Optical mapping and its potential for large-scale sequencing projects","volume":"17","author":"Aston","year":"1999","journal-title":"Trends Biotechnol."},{"key":"2023012511003701400_B2","doi-asserted-by":"crossref","first-page":"9573","DOI":"10.1073\/pnas.132259199","article-title":"Intraspecific violation of genetic colinearity and its implications in maize","volume":"99","author":"Fu","year":"2002","journal-title":"Proc. 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