{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,5]],"date-time":"2026-01-05T15:19:41Z","timestamp":1767626381868},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2538,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The CRISPR genomic structures (Clustered Regularly Interspaced Short Palindromic Repeats) form a family of repeats that is largely present in archaea and frequent in bacteria. On the basis of a formal model of CRISPR using very few parameters, a systematic study of all their occurrences in all available genomes of Archaea and Bacteria has been carried out. This has resulted in a relational database, CRISPI, which also includes a complete repertory of associated CRISPR-associated genes (CAS). A user-friendly web interface with many graphical tools and functions allows users to extract results, find CRISPR in personal sequences or calculate sequence similarity with spacers.<\/jats:p>\n               <jats:p>Availability: CRISPI free access at http:\/\/crispi.genouest.org<\/jats:p>\n               <jats:p>Contact: \u00a0croussea@irisa.fr; jnicolas@irisa.fr;<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp586","type":"journal-article","created":{"date-parts":[[2009,10,22]],"date-time":"2009-10-22T00:34:28Z","timestamp":1256171668000},"page":"3317-3318","source":"Crossref","is-referenced-by-count":106,"title":["CRISPI: a CRISPR interactive database"],"prefix":"10.1093","volume":"25","author":[{"given":"Christine","family":"Rousseau","sequence":"first","affiliation":[{"name":"1 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes cedex and 2UMR 6197 Microbiologie des environnements extr\u00eames, technop\u00f4le Brest-Iroise, BP 70 29280 Plouzan\u00e9, France"}]},{"given":"Mathieu","family":"Gonnet","sequence":"additional","affiliation":[{"name":"1 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes cedex and 2UMR 6197 Microbiologie des environnements extr\u00eames, technop\u00f4le Brest-Iroise, BP 70 29280 Plouzan\u00e9, France"}]},{"given":"Marc","family":"Le Romancer","sequence":"additional","affiliation":[{"name":"1 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes cedex and 2UMR 6197 Microbiologie des environnements extr\u00eames, technop\u00f4le Brest-Iroise, BP 70 29280 Plouzan\u00e9, France"}]},{"given":"Jacques","family":"Nicolas","sequence":"additional","affiliation":[{"name":"1 IRISA-INRIA, Campus de Beaulieu, 35042 Rennes cedex and 2UMR 6197 Microbiologie des environnements extr\u00eames, technop\u00f4le Brest-Iroise, BP 70 29280 Plouzan\u00e9, France"}]}],"member":"286","published-online":{"date-parts":[[2009,10,21]]},"reference":[{"key":"2023013112153784200_B1","doi-asserted-by":"crossref","first-page":"1709","DOI":"10.1126\/science.1138140","article-title":"CRISPR provides acquired resistance against viruses in prokaryotes","volume":"315","author":"Barrangou","year":"2007","journal-title":"Science"},{"key":"2023013112153784200_B2","doi-asserted-by":"crossref","first-page":"209","DOI":"10.1186\/1471-2105-8-209","article-title":"CRISPR recognition tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats","volume":"8","author":"Bland","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"2023013112153784200_B3","doi-asserted-by":"crossref","first-page":"477","DOI":"10.1186\/1471-2105-7-477","article-title":"Browsing repeats in genomes: Pygram and an application to non-coding region analysis","volume":"7","author":"Durand","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023013112153784200_B4","doi-asserted-by":"crossref","first-page":"18","DOI":"10.1186\/1471-2105-8-18","article-title":"Piler-cr: fast and accurate identification of crispr repeats","volume":"8","author":"Edgar","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"2023013112153784200_B5","doi-asserted-by":"crossref","first-page":"172","DOI":"10.1186\/1471-2105-8-172","article-title":"The crisprdb database and tools to display crisprs and to generate dictionaries of spacers and repeats","volume":"8","author":"Grissa","year":"2007","journal-title":"BMC Bioinformatics"},{"key":"2023013112153784200_B6","doi-asserted-by":"crossref","first-page":"W52","DOI":"10.1093\/nar\/gkm360","article-title":"CRISPRfinder: a web tool to identify clustered regularly interspaced short palindromic repeats","volume":"35","author":"Grissa","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"2023013112153784200_B7","doi-asserted-by":"crossref","first-page":"R61","DOI":"10.1186\/gb-2007-8-4-r61","article-title":"Evolutionary conservation of sequence and secondary structures in crispr repeats","volume":"8","author":"Kunin","year":"2007","journal-title":"Genome Biol."},{"key":"2023013112153784200_B8","article-title":"Modeling local repeats on genomic sequences","volume-title":"Research report 6802","author":"Nicolas","year":"2008"},{"key":"2023013112153784200_B9","doi-asserted-by":"crossref","first-page":"181","DOI":"10.1038\/nrmicro1793","article-title":"CRISPR - a widespread system that provides acquired resistance against phages in bacteria and archaea","volume":"6","author":"Sorek","year":"2008","journal-title":"Nat. Rev. Microbiol."},{"key":"2023013112153784200_B10","doi-asserted-by":"crossref","first-page":"537","DOI":"10.1093\/bioinformatics\/bti054","article-title":"Circular genome visualization and exploration using cgview","volume":"21","author":"Stothard","year":"2005","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/24\/3317\/48997571\/bioinformatics_25_24_3317.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/24\/3317\/48997571\/bioinformatics_25_24_3317.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T21:52:40Z","timestamp":1675201960000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/25\/24\/3317\/235872"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,10,21]]},"references-count":10,"journal-issue":{"issue":"24","published-print":{"date-parts":[[2009,12,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btp586","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2009,12,15]]},"published":{"date-parts":[[2009,10,21]]}}}