{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,9,16]],"date-time":"2024-09-16T05:16:41Z","timestamp":1726463801446},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2538,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: G-compass is designed for efficient comparative genome analysis between human and other vertebrate genomes. The current version of G-compass allows us to browse two corresponding genomic regions between human and another species in parallel. One-to-one evolutionarily conserved regions (i.e. orthologous regions) between species are highlighted along the genomes. Information such as locations of duplicated regions, copy number variations and mammalian ultra-conserved elements is also provided. These features of G-compass enable us to easily determine patterns of genomic rearrangements and changes in gene orders through evolutionary time. Since G-compass is a satellite database of H-InvDB, which is a comprehensive annotation resource for human genes and transcripts, users can easily refer to manually curated functional annotations and other abundant biological information for each human transcript. G-compass is expected to be a valuable tool for comparing human and model organisms and promoting the exchange of functional information.<\/jats:p>\n               <jats:p>Availability: G-compass is freely available at http:\/\/www.h-invitational.jp\/g-compass\/.<\/jats:p>\n               <jats:p>Contact: \u00a0t.imanishi@aist.go.jp<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp594","type":"journal-article","created":{"date-parts":[[2009,10,22]],"date-time":"2009-10-22T00:34:28Z","timestamp":1256171668000},"page":"3321-3322","source":"Crossref","is-referenced-by-count":6,"title":["G-compass: a web-based comparative genome browser between human and other vertebrate genomes"],"prefix":"10.1093","volume":"25","author":[{"given":"Yoshihiro","family":"Kawahara","sequence":"first","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"},{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ryuichi","family":"Sakate","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Akihiro","family":"Matsuya","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"},{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Katsuhiko","family":"Murakami","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"},{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yoshiharu","family":"Sato","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Hao","family":"Zhang","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"},{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Takashi","family":"Gojobori","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"},{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Takeshi","family":"Itoh","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. A402 Sanko Building, 20-3 Shimotogari, Nagaizumi-cho, Suntou-gun, Shizuoka 411-0943 and 6Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata 1111, Mishima, Shizuoka 411-8540, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tadashi","family":"Imanishi","sequence":"additional","affiliation":[{"name":"1 Japan Biological Information Research Center, Japan Biological Informatics Consortium, Aomi 2-42, Koto-ku, Tokyo 135-0064, 2Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba, Ibaraki 305-8602, 3Integrated Database and Systems Biology Team, Biomedicinal Information Research Center, National Institute of Advanced Industrial Science and Technology, Aomi 2-42, Koto-ku, Tokyo 135-0064, 4Government & Public Corporation Information Systems, Hitachi, Co., Ltd., Toyo 2-4-18, Koto-ku, Tokyo 135-8633, 5BITS, Co., Ltd. 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