{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,10,16]],"date-time":"2023-10-16T11:21:11Z","timestamp":1697455271490},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: By default, the R statistical environment does not make use of parallelism. Researchers may resort to expensive solutions such as cluster hardware for large analysis tasks. Graphics processing units (GPUs) provide an inexpensive and computationally powerful alternative. Using R and the CUDA toolkit from Nvidia, we have implemented several functions commonly used in microarray gene expression analysis for GPU-equipped computers.<\/jats:p>\n               <jats:p>Results: R users can take advantage of the better performance provided by an Nvidia GPU.<\/jats:p>\n               <jats:p>Availability: The package is available from CRAN, the R project's repository of packages, at http:\/\/cran.r-project.org\/web\/packages\/gputools More information about our gputools R package is available at http:\/\/brainarray.mbni.med.umich.edu\/brainarray\/Rgpgpu<\/jats:p>\n               <jats:p>Contact: \u00a0bucknerj@umich.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp608","type":"journal-article","created":{"date-parts":[[2009,10,23]],"date-time":"2009-10-23T01:53:19Z","timestamp":1256262799000},"page":"134-135","source":"Crossref","is-referenced-by-count":31,"title":["The gputools package enables GPU computing in R"],"prefix":"10.1093","volume":"26","author":[{"given":"Joshua","family":"Buckner","sequence":"first","affiliation":[{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"}]},{"given":"Justin","family":"Wilson","sequence":"additional","affiliation":[{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"}]},{"given":"Mark","family":"Seligman","sequence":"additional","affiliation":[{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"}]},{"given":"Brian","family":"Athey","sequence":"additional","affiliation":[{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"}]},{"given":"Stanley","family":"Watson","sequence":"additional","affiliation":[{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"}]},{"given":"Fan","family":"Meng","sequence":"additional","affiliation":[{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"},{"name":"1 Department of Psychiatry and Molecular and Behavioral Neuroscience Institute, 2 National Center for Integrative Biomedical Informatics, University of Michigan, Ann Arbor, MI 48109 and 3 Rapid Biologics, P.O. Box 31989, Seattle, WA 98103, USA"}]}],"member":"286","published-online":{"date-parts":[[2009,10,22]]},"reference":[{"key":"2023012507525791700_B1","doi-asserted-by":"crossref","DOI":"10.1137\/1.9781611971484","volume-title":"Numerical Methods for Least Squares Problems.","author":"Bjorck","year":"1996"},{"key":"2023012507525791700_B2","author":"Carpenter","year":"2009","journal-title":"cuSVM: a CUDA implementation of support vector classification and regression."},{"key":"2023012507525791700_B3","doi-asserted-by":"crossref","first-page":"118","DOI":"10.1186\/1471-2105-5-118","article-title":"Estimating mutual information using B-spline functions an improved similarity measure for analysing gene expression data","volume":"5","author":"Daub","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2023012507525791700_B4","doi-asserted-by":"crossref","first-page":"145","DOI":"10.1007\/s004220000235","article-title":"Evaluating causal relations in neural systems: granger causality, directed transfer function and statistical assessment of significance","volume":"85","author":"Kaminski","year":"2001","journal-title":"Biol. 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Learn."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/1\/134\/48851508\/bioinformatics_26_1_134.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/1\/134\/48851508\/bioinformatics_26_1_134.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T07:53:16Z","timestamp":1674633196000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/1\/134\/181997"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,10,22]]},"references-count":7,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2010,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btp608","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,1,1]]},"published":{"date-parts":[[2009,10,22]]}}}