{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,26]],"date-time":"2023-01-26T05:20:12Z","timestamp":1674710412075},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Gillespie's stochastic simulation algorithm (SSA) is often the most tractable method to study stochastic models of biochemical systems. The algorithm itself is very simple and a natural target for implementation on specialized architectures such as the Cell Broadband Engine (Cell\/BE). We have developed CellMC, a multiplatform SBML model compiler implementing a vectorized version of SSA for use on Cell\/BE or \u00d786 PCs.<\/jats:p>\n               <jats:p>Availability: The code is freely available from http:\/\/www.cellmc.org. It will run on a wide variety of \u00d786 computers running Linux\/MacOSX (Darwin) and on Cell\/BE computers such as the Sony PlayStation3 (PS3) and the IBM BladeCenter QS22. CellMC requires gcc, libxml2 and libxslt, all of which are installed by default on most of the supported platforms.<\/jats:p>\n               <jats:p>Contact: \u00a0info@www.cellmc.org; andreas.hellander@it.uu.se<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp662","type":"journal-article","created":{"date-parts":[[2009,12,9]],"date-time":"2009-12-09T03:53:26Z","timestamp":1260330806000},"page":"426-428","source":"Crossref","is-referenced-by-count":1,"title":["CellMC\u2014a multiplatform model compiler for the Cell Broadband Engine and \u00d786"],"prefix":"10.1093","volume":"26","author":[{"given":"Emmet","family":"Caulfield","sequence":"first","affiliation":[{"name":"Department of Information Technology, Uppsala University, Box 337, SE-751 05, Uppsala, Sweden"}]},{"given":"Andreas","family":"Hellander","sequence":"additional","affiliation":[{"name":"Department of Information Technology, Uppsala University, Box 337, SE-751 05, Uppsala, Sweden"}]}],"member":"286","published-online":{"date-parts":[[2009,12,8]]},"reference":[{"key":"2023012511003401400_B1","doi-asserted-by":"crossref","first-page":"4059","DOI":"10.1063\/1.1778376","article-title":"Efficient formulation of the stochastic simulation algorithm for chemically reacting systems","volume":"121","author":"Cao","year":"2004","journal-title":"J. Chem. Phys."},{"key":"2023012511003401400_B2","volume-title":"CellMC: An XSLT-based SBML Model Compiler for Cell\/BE and IA32.","author":"Caulfield","year":"2009"},{"key":"2023012511003401400_B3","doi-asserted-by":"crossref","first-page":"1876","DOI":"10.1021\/jp993732q","article-title":"Efficient exact stochastic simulation of chemical systems with many species and many channels","volume":"104","author":"Gibson","year":"2000","journal-title":"J. Phys. Chem."},{"key":"2023012511003401400_B4","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/0021-9991(76)90041-3","article-title":"A general method for numerically simulating the stochastic time evolution of coupled chemical reacting systems","volume":"22","author":"Gillespie","year":"1976","journal-title":"J. Comput. 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