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The program relies on NCBI utilities including the BLAST software and Taxonomy database and is easily manipulated at the command-line to specify a BLAST candidate's query-coverage or percent identity requirements; other options include the ability to set minimal consensus requirements (%) for each of the eight major taxonomic ranks (Domain, Kingdom, Phylum, \u2026) and whether to consider lower scoring candidates when the top-hit lacks taxonomic classification.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/bergelson.uchicago.edu\/software\/marta<\/jats:p>\n               <jats:p>Contact: \u00a0mhorton@uchicago.edu; jbergels@midway.uchicago.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp682","type":"journal-article","created":{"date-parts":[[2009,12,11]],"date-time":"2009-12-11T01:51:16Z","timestamp":1260496276000},"page":"568-569","source":"Crossref","is-referenced-by-count":24,"title":["MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences"],"prefix":"10.1093","volume":"26","author":[{"given":"Matthew","family":"Horton","sequence":"first","affiliation":[{"name":"Department of Ecology and Evolution, 1101 E 57th Street, Chicago, IL 60637, USA"}]},{"given":"Natacha","family":"Bodenhausen","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution, 1101 E 57th Street, Chicago, IL 60637, USA"}]},{"given":"Joy","family":"Bergelson","sequence":"additional","affiliation":[{"name":"Department of Ecology and Evolution, 1101 E 57th Street, Chicago, IL 60637, USA"}]}],"member":"286","published-online":{"date-parts":[[2009,12,10]]},"reference":[{"key":"2023012508025839200_B1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"2023012508025839200_B2","doi-asserted-by":"crossref","first-page":"1214","DOI":"10.1126\/science.1149757","article-title":"Ubiquity of biological ice nucleators in snowfall","volume":"319","author":"Christner","year":"2008","journal-title":"Science"},{"key":"2023012508025839200_B3","doi-asserted-by":"crossref","first-page":"D141","DOI":"10.1093\/nar\/gkn879","article-title":"The Ribosomal Database Project: improved alignments and new tools for rRNA analysis","volume":"37","author":"Cole","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"2023012508025839200_B4","doi-asserted-by":"crossref","first-page":"16428","DOI":"10.1073\/pnas.0905240106","article-title":"Community proteogenomics reveals insights into the physiology of phyllosphere bacteria","volume":"106","author":"Delmotte","year":"2009","journal-title":"Proc. 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