{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T02:36:14Z","timestamp":1773282974494,"version":"3.50.1"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2455,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: BamView is an interactive Java application for visualizing the large amounts of data stored for sequence reads which are aligned against a reference genome sequence. It supports the BAM (Binary Alignment\/Map) format. It can be used in a number of contexts including SNP calling and structural annotation. BamView has also been integrated into Artemis so that the reads can be viewed in the context of the nucleotide sequence and genomic features.<\/jats:p>\n               <jats:p>Availability: BamView and Artemis are freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at: http:\/\/bamview.sourceforge.net\/<\/jats:p>\n               <jats:p>Contact: \u00a0artemis@sanger.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq010","type":"journal-article","created":{"date-parts":[[2010,1,14]],"date-time":"2010-01-14T01:39:47Z","timestamp":1263433187000},"page":"676-677","source":"Crossref","is-referenced-by-count":67,"title":["BamView: viewing mapped read alignment data in the context of the reference sequence"],"prefix":"10.1093","volume":"26","author":[{"given":"Tim","family":"Carver","sequence":"first","affiliation":[{"name":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ulrike","family":"B\u00f6hme","sequence":"additional","affiliation":[{"name":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Thomas D.","family":"Otto","sequence":"additional","affiliation":[{"name":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Julian","family":"Parkhill","sequence":"additional","affiliation":[{"name":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Matthew","family":"Berriman","sequence":"additional","affiliation":[{"name":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2010,1,12]]},"reference":[{"key":"2023012511010169700_B1","doi-asserted-by":"crossref","first-page":"2672","DOI":"10.1093\/bioinformatics\/btn529","article-title":"Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database","volume":"24","author":"Carver","year":"2008","journal-title":"Bioinformatics"},{"key":"2023012511010169700_B2","doi-asserted-by":"crossref","first-page":"1851","DOI":"10.1101\/gr.078212.108","article-title":"Mapping short DNA sequencing reads and calling variants using mapping quality scores","volume":"18","author":"Li","year":"2008","journal-title":"Genome Res."},{"key":"2023012511010169700_B3","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The sequence alignment\/map format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012511010169700_B4","doi-asserted-by":"crossref","first-page":"2436","DOI":"10.1093\/bioinformatics\/btp412","article-title":"HI: haplotype improver using paired-end short reads","volume":"15","author":"Long","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012511010169700_B5","doi-asserted-by":"crossref","first-page":"2125","DOI":"10.1101\/gr.093443.109","article-title":"LookSeq: a browser-based viewer for deep sequencing data","volume":"19","author":"Manske","year":"2009","journal-title":"Genome Res."},{"key":"2023012511010169700_B6","doi-asserted-by":"crossref","first-page":"1725","DOI":"10.1101\/gr.194201","article-title":"SSAHA: a fast search method for large DNA databases","volume":"11","author":"Ning","year":"2001","journal-title":"Genome Res"},{"key":"2023012511010169700_B7","article-title":"New insights into the blood stage transcriptome of Plasmodium falciparum using RNA-Seq","author":"Otto","year":"2009","journal-title":"Mol. 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Genet"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/5\/676\/48860465\/bioinformatics_26_5_676.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/5\/676\/48860465\/bioinformatics_26_5_676.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T11:06:18Z","timestamp":1674644778000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/5\/676\/212642"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,1,12]]},"references-count":9,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2010,3,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq010","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,3,1]]},"published":{"date-parts":[[2010,1,12]]}}}