{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,21]],"date-time":"2026-04-21T13:20:43Z","timestamp":1776777643377,"version":"3.51.2"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2385,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: EBImage provides general purpose functionality for reading, writing, processing and analysis of images. Furthermore, in the context of microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and use of existing tools in the R environment for signal processing, statistical modeling, machine learning and data visualization.<\/jats:p>\n               <jats:p>Availability: EBImage is free and open source, released under the LGPL license and available from the Bioconductor project (http:\/\/www.bioconductor.org\/packages\/release\/bioc\/html\/EBImage.html).<\/jats:p>\n               <jats:p>Contact: \u00a0gregoire.pau@ebi.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq046","type":"journal-article","created":{"date-parts":[[2010,3,25]],"date-time":"2010-03-25T08:48:25Z","timestamp":1269506905000},"page":"979-981","source":"Crossref","is-referenced-by-count":690,"title":["EBImage\u2014an R package for image processing with applications to cellular phenotypes"],"prefix":"10.1093","volume":"26","author":[{"given":"Gr\u00e9goire","family":"Pau","sequence":"first","affiliation":[{"name":"1 EMBL\u2014European Bioinformatics Institute, Cambridge, UK and 2 German Cancer Research Center (DKFZ), Division of Signaling and Functional Genomics, University of Heidelberg, Heidelberg, Germany"}]},{"given":"Florian","family":"Fuchs","sequence":"additional","affiliation":[{"name":"1 EMBL\u2014European Bioinformatics Institute, Cambridge, UK and 2 German Cancer Research Center (DKFZ), Division of Signaling and Functional Genomics, University of Heidelberg, Heidelberg, Germany"}]},{"given":"Oleg","family":"Sklyar","sequence":"additional","affiliation":[{"name":"1 EMBL\u2014European Bioinformatics Institute, Cambridge, UK and 2 German Cancer Research Center (DKFZ), Division of Signaling and Functional Genomics, University of Heidelberg, Heidelberg, Germany"}]},{"given":"Michael","family":"Boutros","sequence":"additional","affiliation":[{"name":"1 EMBL\u2014European Bioinformatics Institute, Cambridge, UK and 2 German Cancer Research Center (DKFZ), Division of Signaling and Functional Genomics, University of Heidelberg, Heidelberg, Germany"}]},{"given":"Wolfgang","family":"Huber","sequence":"additional","affiliation":[{"name":"1 EMBL\u2014European Bioinformatics Institute, Cambridge, UK and 2 German Cancer Research Center (DKFZ), Division of Signaling and Functional Genomics, University of Heidelberg, Heidelberg, Germany"}]}],"member":"286","published-online":{"date-parts":[[2010,3,23]]},"reference":[{"key":"2023012508040246400_B1","doi-asserted-by":"crossref","first-page":"R100","DOI":"10.1186\/gb-2006-7-10-r100","article-title":"CellProfiler: image analysis software for identifying and quantifying cell phenotypes","volume":"7","author":"Carpenter","year":"2006","journal-title":"Genome Biol."},{"key":"2023012508040246400_B2","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: open software development for computational biology and bioinformatics","volume":"5","author":"Gentleman","year":"2004","journal-title":"Genome Biol."},{"key":"2023012508040246400_B3","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1007\/11569541_54","article-title":"Voronoi-based segmentation of cells on image manifolds","volume":"3765","author":"Jones","year":"2005","journal-title":"Computer Vision for Biomedical Image Applications"},{"key":"2023012508040246400_B4","doi-asserted-by":"crossref","first-page":"27","DOI":"10.1186\/1475-4924-2-27","article-title":"A functional genomic analysis of cell morphology using RNA interference","volume":"2","author":"Kiger","year":"2003","journal-title":"J. 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