{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,4]],"date-time":"2025-11-04T15:50:19Z","timestamp":1762271419518},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2398,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: A pangenome is the total of genes present in strains of the same species. Pangenome microarrays allow determining the genomic content of bacterial strains more accurately than conventional comparative genome hybridization microarrays. PanCGHweb is the first tool that effectively calls genotype based on pangenome microarray data.<\/jats:p>\n               <jats:p>Availability: PanCGHweb, the web tool is accessible from: http:\/\/bamics2.cmbi.ru.nl\/websoftware\/pancgh\/<\/jats:p>\n               <jats:p>Contact: \u00a0sacha.vanhijum@nizo.nl<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq103","type":"journal-article","created":{"date-parts":[[2010,3,11]],"date-time":"2010-03-11T03:33:22Z","timestamp":1268278402000},"page":"1256-1257","source":"Crossref","is-referenced-by-count":19,"title":["PanCGHweb: a web tool for genotype calling in pangenome CGH data"],"prefix":"10.1093","volume":"26","author":[{"given":"Jumamurat R.","family":"Bayjanov","sequence":"first","affiliation":[{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"}]},{"given":"Roland J.","family":"Siezen","sequence":"additional","affiliation":[{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"}]},{"given":"Sacha A. F. T.","family":"van Hijum","sequence":"additional","affiliation":[{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"},{"name":"1 Radboud University Medical Centre, Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, 2 Netherlands Bioinformatics Centre, 260 NBIC, PO Box 9101, 6500 HB Nijmegen, 3 TI Food and Nutrition, PO Box 557, 6700 AN Wageningen, 4 NIZO Food Research, PO Box 20, 6710 BA Ede and 5 Kluyver Centre for Genomics of Industrial Fermentation, PO Box 5057, 2600 GA Delft, The Netherlands"}]}],"member":"286","published-online":{"date-parts":[[2010,3,10]]},"reference":[{"key":"2023012508164732200_B1","doi-asserted-by":"crossref","first-page":"309","DOI":"10.1093\/bioinformatics\/btn632","article-title":"PanCGH: a genotype-calling algorithm for pangenome CGH data","volume":"25","author":"Bayjanov","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012508164732200_B2","doi-asserted-by":"crossref","first-page":"676","DOI":"10.1128\/AEM.01683-08","article-title":"Discovery of stable and variable differences in the Mycobacterium avium subsp. paratuberculosis type I, II, and III genomes by pan-genome microarray analysis","volume":"75","author":"Castellanos","year":"2009","journal-title":"Appl. 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