{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,26]],"date-time":"2023-01-26T05:20:10Z","timestamp":1674710410819},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2361,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation:A large part of the maize B73 genome sequence is now available and emerging sequencing technologies will offer cheap and easy ways to sequence areas of interest from many other maize genotypes. One of the steps required to turn these sequences into valuable information is gene content prediction. To date, there is no publicly available gene predictor specifically trained for maize sequences. To this end, we have chosen to train the EuG\u00e8ne software that can combine several sources of evidence into a consolidated gene model prediction.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/genome.jouy.inra.fr\/eugene\/cgi-bin\/eugene_form.pl<\/jats:p>\n               <jats:p>Contact: \u00a0joets@moulon.inra.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq123","type":"journal-article","created":{"date-parts":[[2010,4,18]],"date-time":"2010-04-18T00:12:49Z","timestamp":1271549569000},"page":"1254-1255","source":"Crossref","is-referenced-by-count":1,"title":["EuG\u00e8ne-maize: a web site for maize gene prediction"],"prefix":"10.1093","volume":"26","author":[{"given":"Pierre","family":"Montalent","sequence":"first","affiliation":[{"name":"INRA, UMR 0320 \/ UMR 8120 G\u00e9n\u00e9tique V\u00e9g\u00e9tale, F-91190 Gif-sur-Yvette, France"}]},{"given":"Johann","family":"Joets","sequence":"additional","affiliation":[{"name":"INRA, UMR 0320 \/ UMR 8120 G\u00e9n\u00e9tique V\u00e9g\u00e9tale, F-91190 Gif-sur-Yvette, France"}]}],"member":"286","published-online":{"date-parts":[[2010,4,16]]},"reference":[{"key":"2023012508124637600_B1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"2023012508124637600_B2","doi-asserted-by":"crossref","first-page":"1332","DOI":"10.1093\/bioinformatics\/bti166","article-title":"SpliceMachine: predicting splice sites from high-dimensional local context representations","volume":"21","author":"Degroeve","year":"2005","journal-title":"Bioinformatics"},{"key":"2023012508124637600_B3","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1186\/1471-2105-6-25","article-title":"Integrating alternative splicing detection into gene prediction","volume":"6","author":"Foissac","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"2023012508124637600_B4","doi-asserted-by":"crossref","first-page":"965","DOI":"10.1016\/j.infsof.2005.09.005","article-title":"Engineering a software tool for gene structure prediction in higher organisms","volume":"47","author":"Gremme","year":"2005","journal-title":"Inf. Soft. Technol."},{"key":"2023012508124637600_B5","doi-asserted-by":"crossref","first-page":"1612","DOI":"10.1104\/pp.105.068718","article-title":"Structure and architecture of the maize genome","volume":"139","author":"Haberer","year":"2005","journal-title":"Plant Physiol."},{"key":"2023012508124637600_B6","first-page":"656","article-title":"BLAT\u2013the BLAST-like alignment tool","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res."},{"key":"2023012508124637600_B7","doi-asserted-by":"crossref","first-page":"1912","DOI":"10.1101\/gr.088997.108","article-title":"Evidence-based gene predictions in plant genomes","volume":"19","author":"Liang","year":"2009","journal-title":"Genome Res."},{"key":"2023012508124637600_B8","doi-asserted-by":"crossref","first-page":"11844","DOI":"10.1073\/pnas.0704258104","article-title":"A GeneTrek analysis of the maize genome","volume":"104","author":"Liu","year":"2007","journal-title":"Proc. Natl Acad. Sci. 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Biol."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/9\/1254\/48854814\/bioinformatics_26_9_1254.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/9\/1254\/48854814\/bioinformatics_26_9_1254.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T08:13:31Z","timestamp":1674634411000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/9\/1254\/201139"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,4,16]]},"references-count":11,"journal-issue":{"issue":"9","published-print":{"date-parts":[[2010,5,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq123","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,5,1]]},"published":{"date-parts":[[2010,4,16]]}}}