{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T15:19:38Z","timestamp":1764688778748},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"10","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2372,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Payao is a community-based, collaborative web service platform for gene-regulatory and biochemical pathway model curation. The system combines Web 2.0 technologies and online model visualization functions to enable a collaborative community to annotate and curate biological models. Payao reads the models in Systems Biology Markup Language format, displays them with CellDesigner, a process diagram editor, which complies with the Systems Biology Graphical Notation, and provides an interface for model enrichment (adding tags and comments to the models) for the access-controlled community members.<\/jats:p>\n               <jats:p>Availability and implementation: Freely available for model curation service at http:\/\/www.payaologue.org. Web site implemented in Seaser Framework 2.0 with S2Flex2, MySQL 5.0 and Tomcat 5.5, with all major browsers supported.<\/jats:p>\n               <jats:p>Contact: \u00a0kitano@sbi.jp<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq143","type":"journal-article","created":{"date-parts":[[2010,4,7]],"date-time":"2010-04-07T05:37:32Z","timestamp":1270618652000},"page":"1381-1383","source":"Crossref","is-referenced-by-count":44,"title":["Payao: a community platform for SBML pathway model curation"],"prefix":"10.1093","volume":"26","author":[{"given":"Yukiko","family":"Matsuoka","sequence":"first","affiliation":[{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"},{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"}]},{"given":"Samik","family":"Ghosh","sequence":"additional","affiliation":[{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"}]},{"given":"Norihiro","family":"Kikuchi","sequence":"additional","affiliation":[{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"}]},{"given":"Hiroaki","family":"Kitano","sequence":"additional","affiliation":[{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"},{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"},{"name":"1 The Systems Biology Institute, Tokyo, 2 JST ERATO Kawaoka Infection-induced Host-response Network Project, Tokyo, 3 Mitsui Knowledge Industry Co. Ltd, Tokyo, 4 Okinawa Institute of Science and Technology, Okinawa and 5 Sony Computer Science Laboratories, Tokyo, Japan"}]}],"member":"286","published-online":{"date-parts":[[2010,4,5]]},"reference":[{"key":"2023012507515868900_B1","doi-asserted-by":"crossref","first-page":"290","DOI":"10.1038\/msb.2009.47","article-title":"Pathway databases and tools for their exploitation: benefits, current limitations and challenges","volume":"5","author":"Bauer-Mehren","year":"2009","journal-title":"Mol. Syst. Biol."},{"key":"2023012507515868900_B2","doi-asserted-by":"crossref","first-page":"1254","DOI":"10.1109\/JPROC.2008.925458","article-title":"CellDesigner 3.5: a versatile modeling tool for biochemical networks","volume":"96","author":"Funahashi","year":"2008","journal-title":"Pro. IEEE"},{"key":"2023012507515868900_B3","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1093\/bioinformatics\/btg015","article-title":"The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models","volume":"19","author":"Hucka","year":"2003","journal-title":"Bioinformatics"},{"key":"2023012507515868900_B4","doi-asserted-by":"crossref","first-page":"1509","DOI":"10.1038\/nbt1156","article-title":"Minimum information requested in the annotation of biochemical models (MIRIAM)","volume":"23","author":"Le Nov\u00e8re","year":"2005","journal-title":"Nat. Biotechnol."},{"key":"2023012507515868900_B5","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1038\/nbt.1558","article-title":"Systems biology graphical notation","volume":"8","author":"Le Nov\u00e8re","year":"2009","journal-title":"Nat. Biotech."},{"key":"2023012507515868900_B6","doi-asserted-by":"crossref","first-page":"e184","DOI":"10.1371\/journal.pbio.0060184","article-title":"WikiPathways: pathway editing for the people","volume":"6","author":"Pico","year":"2008","journal-title":"PLoS Biol."},{"key":"2023012507515868900_B7"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/10\/1381\/48851515\/bioinformatics_26_10_1381.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/10\/1381\/48851515\/bioinformatics_26_10_1381.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T07:52:30Z","timestamp":1674633150000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/10\/1381\/193921"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,4,5]]},"references-count":7,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2010,5,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq143","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,5,15]]},"published":{"date-parts":[[2010,4,5]]}}}