{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,25]],"date-time":"2026-04-25T05:02:47Z","timestamp":1777093367741,"version":"3.51.4"},"reference-count":19,"publisher":"Oxford University Press (OUP)","issue":"12","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,6,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present a new web server called TAPIR, designed for the prediction of plant microRNA targets. The server offers the possibility to search for plant miRNA targets using a fast and a precise algorithm. The precise option is much slower but guarantees to find less perfectly paired miRNA-target duplexes. Furthermore, the precise option allows the prediction of target mimics, which are characterized by a miRNA-target duplex having a large loop, making them undetectable by traditional tools.<\/jats:p>\n               <jats:p>Availability: The TAPIR web server can be accessed at: http:\/\/bioinformatics.psb.ugent.be\/webtools\/tapir<\/jats:p>\n               <jats:p>Contact: \u00a0yves.vandepeer@psb.vib-ugent.be<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq233","type":"journal-article","created":{"date-parts":[[2010,4,30]],"date-time":"2010-04-30T00:18:26Z","timestamp":1272586706000},"page":"1566-1568","source":"Crossref","is-referenced-by-count":331,"title":["TAPIR, a web server for the prediction of plant microRNA targets, including target mimics"],"prefix":"10.1093","volume":"26","author":[{"given":"Eric","family":"Bonnet","sequence":"first","affiliation":[{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"},{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"}]},{"given":"Ying","family":"He","sequence":"additional","affiliation":[{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"},{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"}]},{"given":"Kenny","family":"Billiau","sequence":"additional","affiliation":[{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"},{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"}]},{"given":"Yves","family":"Van de Peer","sequence":"additional","affiliation":[{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"},{"name":"1 Department of Plant Systems Biology, VIB and 2 Department of Molecular Genetics, Ghent University, Technologiepark 927, B-9052 Gent, Belgium"}]}],"member":"286","published-online":{"date-parts":[[2010,4,28]]},"reference":[{"key":"2023012508053745100_B1","doi-asserted-by":"crossref","first-page":"758","DOI":"10.1016\/j.cub.2008.04.042","article-title":"Endogenous siRNA and miRNA targets identified by sequencing of the Arabidopsis degradome","volume":"18","author":"Addo-Quaye","year":"2008","journal-title":"Curr. 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