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They also allow tree drawing as scalable vector graphics (SVG), suitable for high-quality presentations and further editing, and as ASCII graphics for command-line inspection. As an example we include an implementation of bootscanning, a procedure for finding recombination breakpoints in viral genomes.<\/jats:p>\n               <jats:p>Availability: C source code, Python bindings and executables for various platforms are available from http:\/\/cegg.unige.ch\/newick_utils. The distribution includes a manual and example data. The package is distributed under the BSD License.<\/jats:p>\n               <jats:p>Contact: \u00a0thomas.junier@unige.ch<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq243","type":"journal-article","created":{"date-parts":[[2010,5,15]],"date-time":"2010-05-15T00:17:52Z","timestamp":1273882672000},"page":"1669-1670","source":"Crossref","is-referenced-by-count":754,"title":["The Newick utilities: high-throughput phylogenetic tree processing in the U<scp>nix<\/scp> shell"],"prefix":"10.1093","volume":"26","author":[{"given":"Thomas","family":"Junier","sequence":"first","affiliation":[{"name":"1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UK"},{"name":"1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UK"}]},{"given":"Evgeny M.","family":"Zdobnov","sequence":"additional","affiliation":[{"name":"1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UK"},{"name":"1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UK"},{"name":"1 Department of Genetic Medicine and Development, University of Geneva Medical School, 2 Swiss Institute of Bioinformatics, 1 rue Michel-Servet, 1211 Geneva, Switzerland and 3 Imperial College London, South Kensington Campus, SW7 2AZ, London, UK"}]}],"member":"286","published-online":{"date-parts":[[2010,5,13]]},"reference":[{"key":"2023012507554827900_B1","author":"Archie","year":"1986"},{"key":"2023012507554827900_B2","doi-asserted-by":"crossref","first-page":"1792","DOI":"10.1093\/nar\/gkh340","article-title":"MUSCLE: multiple sequence alignment with high accuracy and high throughput","volume":"32","author":"Edgar","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"2023012507554827900_B3","first-page":"164","article-title":"PHYLIP - Phylogeny Inference Package (version 3.2)","volume":"5","author":"Felsenstein","year":"1989","journal-title":"Cladistics"},{"key":"2023012507554827900_B4","doi-asserted-by":"crossref","first-page":"696","DOI":"10.1080\/10635150390235520","article-title":"A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood","volume":"52","author":"Guindon","year":"2003","journal-title":"Syst. 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