{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,2]],"date-time":"2025-12-02T15:19:25Z","timestamp":1764688765212},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present an open source, platform independent tool, called CisGenome Browser, which can work together with any other data analysis program to serve as a flexible component for genomic data visualization. It can also work by itself as a standalone genome browser. By working as a light-weight web server, CisGenome Browser is a convenient tool for data sharing between labs. It has features that are specifically designed for ultra high-throughput sequencing data visualization.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/biogibbs.stanford.edu\/\u223cjiangh\/browser\/<\/jats:p>\n               <jats:p>Contact: \u00a0jiangh@stanford.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq286","type":"journal-article","created":{"date-parts":[[2010,6,1]],"date-time":"2010-06-01T00:24:30Z","timestamp":1275351870000},"page":"1781-1782","source":"Crossref","is-referenced-by-count":40,"title":["CisGenome Browser: a flexible tool for genomic data visualization"],"prefix":"10.1093","volume":"26","author":[{"given":"Hui","family":"Jiang","sequence":"first","affiliation":[{"name":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"},{"name":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"}]},{"given":"Fan","family":"Wang","sequence":"additional","affiliation":[{"name":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"}]},{"given":"Nigel P.","family":"Dyer","sequence":"additional","affiliation":[{"name":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"}]},{"given":"Wing Hung","family":"Wong","sequence":"additional","affiliation":[{"name":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"},{"name":"1 Department of Statistics, 2 Stanford Genome Technology Center, 3 Department of Electrical Engineering, Stanford University, Stanford, CA 94305, USA, 4 Systems Biology Centre, Coventry House, the University of Warwick, Coventry, CV4 7AL, UK and 5 Department of Health Research and Policy, Stanford University, Stanford, CA 94305, USA"}]}],"member":"286","published-online":{"date-parts":[[2010,5,30]]},"reference":[{"key":"2023012507593556400_B1","doi-asserted-by":"crossref","first-page":"D707","DOI":"10.1093\/nar\/gkm988","article-title":"Ensembl 2008","volume":"36","author":"Flicek","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"2023012507593556400_B2","doi-asserted-by":"crossref","first-page":"D773","DOI":"10.1093\/nar\/gkm966","article-title":"The UCSC genome browser database: 2008 update","volume":"36","author":"Karolchik","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"2023012507593556400_B3","doi-asserted-by":"crossref","first-page":"1293","DOI":"10.1038\/nbt.1505","article-title":"An integrated software system for analyzing ChIP-chip and ChIP-seq data","volume":"26","author":"Ji","year":"2008","journal-title":"Nat. Biotechnol."},{"key":"2023012507593556400_B4","doi-asserted-by":"crossref","first-page":"120","DOI":"10.1007\/0-387-21679-0_5","article-title":"DNA-chip analyzer (dChip)","volume-title":"The Analysis of Gene Expression Data: Methods and Software.","author":"Li","year":"2003"},{"key":"2023012507593556400_B5","doi-asserted-by":"crossref","first-page":"2078","DOI":"10.1093\/bioinformatics\/btp352","article-title":"The Sequence alignment\/map (SAM) format and SAMtools","volume":"25","author":"Li","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012507593556400_B6","doi-asserted-by":"crossref","first-page":"2730","DOI":"10.1093\/bioinformatics\/btp472","article-title":"The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets","volume":"25","author":"Nicol","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012507593556400_B7","doi-asserted-by":"crossref","first-page":"D39","DOI":"10.1093\/nar\/gki062","article-title":"Database resources of the National Center for Biotechnology Information","volume":"33","author":"Wheeler","year":"2005","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/14\/1781\/48854169\/bioinformatics_26_14_1781.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/14\/1781\/48854169\/bioinformatics_26_14_1781.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T07:59:45Z","timestamp":1674633585000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/14\/1781\/178901"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,5,30]]},"references-count":7,"journal-issue":{"issue":"14","published-print":{"date-parts":[[2010,7,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq286","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,7,15]]},"published":{"date-parts":[[2010,5,30]]}}}