{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,15]],"date-time":"2026-03-15T06:49:43Z","timestamp":1773557383933,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"15","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2270,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present SVDetect, a program designed to identify genomic structural variations from paired-end and mate-pair next-generation sequencing data produced by the Illumina GA and ABI SOLiD platforms. Applying both sliding-window and clustering strategies, we use anomalously mapped read pairs provided by current short read aligners to localize genomic rearrangements and classify them according to their type, e.g. large insertions\u2013deletions, inversions, duplications and balanced or unbalanced inter-chromosomal translocations. SVDetect outputs predicted structural variants in various file formats for appropriate graphical visualization.<\/jats:p>\n               <jats:p>Availability: Source code and sample data are available at http:\/\/svdetect.sourceforge.net\/<\/jats:p>\n               <jats:p>Contact: \u00a0svdetect@curie.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq293","type":"journal-article","created":{"date-parts":[[2010,7,17]],"date-time":"2010-07-17T12:23:09Z","timestamp":1279369389000},"page":"1895-1896","source":"Crossref","is-referenced-by-count":160,"title":["SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data"],"prefix":"10.1093","volume":"26","author":[{"given":"Bruno","family":"Zeitouni","sequence":"first","affiliation":[{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"},{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"},{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"}]},{"given":"Valentina","family":"Boeva","sequence":"additional","affiliation":[{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"},{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"},{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"},{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"}]},{"given":"Isabelle","family":"Janoueix-Lerosey","sequence":"additional","affiliation":[{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"},{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau F-77300, 4INSERM, U830 and 5CNRS, UMR3244, Universit\u00e9 Pierre et Marie Curie, Paris F-75248, France"}]},{"given":"Sophie","family":"Loeillet","sequence":"additional","affiliation":[{"name":"1 Institut Curie, 2INSERM, U900, Paris F-75248, 3Mines ParisTech, Fontainebleau 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