{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,27]],"date-time":"2025-12-27T04:33:14Z","timestamp":1766809994202},"reference-count":4,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2273,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,9,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The recently proposed Systems Biology Graphical Notation (SBGN) provides a standard for the visual representation of biochemical and cellular processes. It aims to support more efficient and accurate communication of biological knowledge between different research communities in the life sciences. However, to increase the use of SBGN, tools for editing, validating and translating SBGN maps are desirable.<\/jats:p>\n               <jats:p>Results: We present SBGN-ED, a tool which allows the creation of all three types of SBGN maps from scratch or the editing of existing maps, the validation of these maps for syntactical and semantical correctness, the translation of networks from the KEGG and MetaCrop databases into SBGN and the export of SBGN maps into several file and image formats.<\/jats:p>\n               <jats:p>Availability: \u00a0SBGN-ED is freely available from http:\/\/vanted.ipk-gatersleben.de\/addons\/sbgn-ed. The web site contains also tutorials and example files.<\/jats:p>\n               <jats:p>Contact: \u00a0schreibe@ipk-gatersleben.de<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq407","type":"journal-article","created":{"date-parts":[[2010,7,14]],"date-time":"2010-07-14T02:24:06Z","timestamp":1279074246000},"page":"2340-2341","source":"Crossref","is-referenced-by-count":73,"title":["Editing, validating and translating of SBGN maps"],"prefix":"10.1093","volume":"26","author":[{"given":"Tobias","family":"Czauderna","sequence":"first","affiliation":[{"name":"1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and 2Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany"}]},{"given":"Christian","family":"Klukas","sequence":"additional","affiliation":[{"name":"1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and 2Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany"}]},{"given":"Falk","family":"Schreiber","sequence":"additional","affiliation":[{"name":"1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and 2Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany"},{"name":"1 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben and 2Institute of Computer Science, Martin Luther University of Halle-Wittenberg, Halle, Germany"}]}],"member":"286","published-online":{"date-parts":[[2010,7,13]]},"reference":[{"key":"2023012508230181600_B1","doi-asserted-by":"crossref","first-page":"D954","DOI":"10.1093\/nar\/gkm835","article-title":"MetaCrop - a detailed database of crop plant metabolism","volume":"36","author":"Grafahrend-Belau","year":"2008","journal-title":"Nucleic Acids Res"},{"key":"2023012508230181600_B2","doi-asserted-by":"crossref","first-page":"109.1","DOI":"10.1186\/1471-2105-7-109","article-title":"VANTED: a system for advanced data analysis and visualization in the context of biological networks","volume":"7","author":"Junker","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023012508230181600_B3","doi-asserted-by":"crossref","first-page":"D355","DOI":"10.1093\/nar\/gkp896","article-title":"KEGG for representation and analysis of molecular networks involving diseases and drugs","volume":"38","author":"Kanehisa","year":"2010","journal-title":"Nucleic Acids Res"},{"key":"2023012508230181600_B4","doi-asserted-by":"crossref","first-page":"735","DOI":"10.1038\/nbt.1558","article-title":"The systems biology graphical notation","volume":"27","author":"Le Nov\u00e8re","year":"2009","journal-title":"Nat. Biotechnol"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/18\/2340\/48858324\/bioinformatics_26_18_2340.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/18\/2340\/48858324\/bioinformatics_26_18_2340.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T08:23:16Z","timestamp":1674634996000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/18\/2340\/207890"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,7,13]]},"references-count":4,"journal-issue":{"issue":"18","published-print":{"date-parts":[[2010,9,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq407","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,9,15]]},"published":{"date-parts":[[2010,7,13]]}}}