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The software is provided as open source C++ code built on top of JAGS software with an R interface.<\/jats:p>\n               <jats:p>Availability: The R package CoGAPS and the C++ package GAPS-JAGS are provided open source under the GNU Lesser Public License (GLPL) with a users manual containing installation and operating instructions. CoGAPS is available through Bioconductor and depends on the rjags package available through CRAN to interface CoGAPS with GAPS-JAGS.<\/jats:p>\n               <jats:p>URL: \u00a0http:\/\/www.cancerbiostats.onc.jhmi.edu\/cogaps.cfm<\/jats:p>\n               <jats:p>Contact: \u00a0ejfertig@jhmi.edu; mfo@jhu.edu<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data is available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq503","type":"journal-article","created":{"date-parts":[[2010,9,2]],"date-time":"2010-09-02T02:00:56Z","timestamp":1283392856000},"page":"2792-2793","source":"Crossref","is-referenced-by-count":94,"title":["CoGAPS: an R\/C++ package to identify patterns and biological process activity in transcriptomic data"],"prefix":"10.1093","volume":"26","author":[{"given":"Elana J.","family":"Fertig","sequence":"first","affiliation":[{"name":"1 Department of Oncology and Division of Oncology, Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, 2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA and 3Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jie","family":"Ding","sequence":"additional","affiliation":[{"name":"1 Department of Oncology and Division of Oncology, Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, 2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA and 3Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexander V.","family":"Favorov","sequence":"additional","affiliation":[{"name":"1 Department of Oncology and Division of Oncology, Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, 2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA and 3Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia"},{"name":"1 Department of Oncology and Division of Oncology, Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, 2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA and 3Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Giovanni","family":"Parmigiani","sequence":"additional","affiliation":[{"name":"1 Department of Oncology and Division of Oncology, Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, 2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA and 3Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael F.","family":"Ochs","sequence":"additional","affiliation":[{"name":"1 Department of Oncology and Division of Oncology, Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive Cancer Center, School of Medicine, Johns Hopkins University, Baltimore, MD 21205, 2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA and 3Research Institute for Genetics and Selection of Industrial Microorganisms, Moscow, 117545, Russia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2010,9,1]]},"reference":[{"key":"2023012507544060500_B1","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1186\/1471-2105-7-99","article-title":"Determination of strongly overlapping signaling activity from microarray data","volume":"7","author":"Bidaut","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023012507544060500_B2","doi-asserted-by":"crossref","first-page":"1438","DOI":"10.1198\/016214508000000869","article-title":"High-dimensional sparse factor modelling: applications in gene expression genomics","volume":"103","author":"Carvalho","year":"2008","journal-title":"J. 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