{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,2,17]],"date-time":"2023-02-17T16:10:54Z","timestamp":1676650254227},"reference-count":1,"publisher":"Oxford University Press (OUP)","issue":"21","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: PubDNA Finder is an online repository that we have created to link PubMed Central manuscripts to the sequences of nucleic acids appearing in them. It extends the search capabilities provided by PubMed Central by enabling researchers to perform advanced searches involving sequences of nucleic acids. This includes, among other features (i) searching for papers mentioning one or more specific sequences of nucleic acids and (ii) retrieving the genetic sequences appearing in different articles. These additional query capabilities are provided by a searchable index that we created by using the full text of the 176 672 papers available at PubMed Central at the time of writing and the sequences of nucleic acids appearing in them. To automatically extract the genetic sequences occurring in each paper, we used an original method we have developed. The database is updated monthly by automatically connecting to the PubMed Central FTP site to retrieve and index new manuscripts. Users can query the database via the web interface provided.<\/jats:p>\n               <jats:p>Availability: PubDNA Finder can be freely accessed at http:\/\/servet.dia.fi.upm.es:8080\/pubdnafinder<\/jats:p>\n               <jats:p>Contact: \u00a0mgarcia@infomed.dia.fi.upm.es<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq520","type":"journal-article","created":{"date-parts":[[2010,9,10]],"date-time":"2010-09-10T00:18:07Z","timestamp":1284077887000},"page":"2801-2802","source":"Crossref","is-referenced-by-count":8,"title":["PubDNA Finder: a web database linking full-text articles to sequences of nucleic acids"],"prefix":"10.1093","volume":"26","author":[{"given":"Miguel","family":"Garc\u00eda-Remesal","sequence":"first","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"},{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"Alejandro","family":"Cuevas","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"David","family":"P\u00e9rez-Rey","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"},{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"Luis","family":"Mart\u00edn","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"Alberto","family":"Anguita","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"Diana","family":"de la Iglesia","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"Guillermo","family":"de la Calle","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"Jos\u00e9","family":"Crespo","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"},{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]},{"given":"V\u00edctor","family":"Maojo","sequence":"additional","affiliation":[{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"},{"name":"1 Departamento de Inteligencia Artificial, Facultad de Inform\u00e1tica, 2Biomedical Informatics Group, Facultad de Inform\u00e1tica and 3Departamento de Lenguajes, Sistemas Inform\u00e1ticos e Ingenier\u00eda del Software, Facultad de Inform\u00e1tica, Universidad Polit\u00e9cnica de Madrid, Campus de Montegacedo S\/N, 28660 Boadilla del Monte, Madrid, Spain"}]}],"member":"286","published-online":{"date-parts":[[2010,9,9]]},"reference":[{"key":"2023012507535173900_B1","article-title":"A knowledge engineering approach to recognizing and extracting sequences of nucleic acids from scientific literature","volume-title":"Proceedings of the 32nd Annual Conference of the IEEE Engineering in Medicine and Biology Society.","author":"Garc\u00eda-Remesal","year":"2010"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/21\/2801\/48851380\/bioinformatics_26_21_2801.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/21\/2801\/48851380\/bioinformatics_26_21_2801.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T07:54:00Z","timestamp":1674633240000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/21\/2801\/214288"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,9,9]]},"references-count":1,"journal-issue":{"issue":"21","published-print":{"date-parts":[[2010,11,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq520","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,11,1]]},"published":{"date-parts":[[2010,9,9]]}}}