{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,1]],"date-time":"2026-02-01T18:59:04Z","timestamp":1769972344305,"version":"3.49.0"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"21","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Computational pipelines are common place in scientific research. However, most of the resources for constructing pipelines are heavyweight systems with graphical user interfaces. Ruffus is a library for the creation of computational pipelines. Its lightweight and unobtrusive design recommends it for use even for the most trivial of analyses. At the same time, it is powerful enough to have been used for complex workflows involving more than 50 interdependent stages.<\/jats:p>\n               <jats:p>Availability and implementation: Ruffus is written in python. Source code, a short tutorial, examples and a comprehensive user manual are freely available at http:\/\/www.ruffus.org.uk. The example program is available at http:\/\/www.ruffus.org.uk\/examples\/bioinformatics<\/jats:p>\n               <jats:p>Contact: \u00a0ruffus@llew.org.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq524","type":"journal-article","created":{"date-parts":[[2010,9,17]],"date-time":"2010-09-17T04:07:24Z","timestamp":1284696444000},"page":"2778-2779","source":"Crossref","is-referenced-by-count":119,"title":["Ruffus: a lightweight Python library for computational pipelines"],"prefix":"10.1093","volume":"26","author":[{"given":"Leo","family":"Goodstadt","sequence":"first","affiliation":[{"name":"Medical Research Council Functional Genomics Unit, Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford OX1 3QX, UK"}]}],"member":"286","published-online":{"date-parts":[[2010,9,16]]},"reference":[{"key":"2023012507544080900_B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. Mol. Biol."},{"key":"2023012507544080900_B2","doi-asserted-by":"crossref","first-page":"1422","DOI":"10.1093\/bioinformatics\/btp163","article-title":"Biopython: freely available Python tools for computational molecular biology and bioinformatics","volume":"25","author":"Cock","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012507544080900_B3","doi-asserted-by":"crossref","first-page":"1904","DOI":"10.1101\/gr.1363103","article-title":"Biopipe: a flexible framework for protocol-based bioinformatics analysis","volume":"13","author":"Hoon","year":"2003","journal-title":"Genome Res."},{"key":"2023012507544080900_B4","doi-asserted-by":"crossref","first-page":"3045","DOI":"10.1093\/bioinformatics\/bth361","article-title":"Taverna: a tool for the composition and enactment of bioinformatics workflows","volume":"20","author":"Oinn","year":"2004","journal-title":"Bioinformatics"},{"key":"2023012507544080900_B5","doi-asserted-by":"crossref","first-page":"40","DOI":"10.1186\/1471-2105-5-40","article-title":"Pegasys: software for executing and integrating analyses of biological sequences","volume":"5","author":"Shah","year":"2004","journal-title":"BMC Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/21\/2778\/48853569\/bioinformatics_26_21_2778.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/21\/2778\/48853569\/bioinformatics_26_21_2778.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T07:55:20Z","timestamp":1674633320000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/21\/2778\/214489"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,9,16]]},"references-count":5,"journal-issue":{"issue":"21","published-print":{"date-parts":[[2010,11,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq524","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,11,1]]},"published":{"date-parts":[[2010,9,16]]}}}