{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,6,25]],"date-time":"2023-06-25T00:51:05Z","timestamp":1687654265812},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"22","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2203,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,11,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The R\/Bioconductor package girafe facilitates the functional exploration of alignments of sequence reads from next-generation sequencing data to a genome. It allows users to investigate the genomic intervals together with the aligned reads and to work with, visualise and export these intervals. Moreover, the package operates within and extends the ever-growing Bioconductor framework and thus enables users to leverage a multitude of methods for their data in order to answer specific research questions.<\/jats:p>\n               <jats:p>Availability and Implementation: The R package girafe is available from the Bioconductor web site: http:\/\/www.bioconductor.org\/packages\/release\/bioc\/html\/girafe.html<\/jats:p>\n               <jats:p>An extensive vignette and the Bioconductor mailing lists provide additional documentation and help for using the package.<\/jats:p>\n               <jats:p>Contact: \u00a0joern.toedling@curie.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq531","type":"journal-article","created":{"date-parts":[[2010,9,23]],"date-time":"2010-09-23T00:31:47Z","timestamp":1285201907000},"page":"2902-2903","source":"Crossref","is-referenced-by-count":11,"title":["girafe \u2013 an R\/Bioconductor package for functional exploration of aligned next-generation sequencing reads"],"prefix":"10.1093","volume":"26","author":[{"given":"Joern","family":"Toedling","sequence":"first","affiliation":[{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"},{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"},{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"},{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"},{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"}]},{"given":"Constance","family":"Ciaudo","sequence":"additional","affiliation":[{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"},{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis Pasteur, Strasbourg, France"},{"name":"1 Institut Curie, 26 rue d'Ulm, F-75248 Paris, 2INSERM U900, F-75248 Paris, 3Mines ParisTech, F-77300 Fontainebleau, 4CNRS UMR3215, F-75248 Paris, 5INSERM U934, F-75248 Paris and 6Institut de Biologie Mol\u00e9culaire des Plantes, CNRS UPR2357, Universit\u00e9 Louis 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