{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,26]],"date-time":"2026-03-26T22:33:00Z","timestamp":1774564380063,"version":"3.50.1"},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"22","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,11,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors.<\/jats:p>\n               <jats:p>Availability: BUCKy is open source and distributed under the GNU general public license at www.stat.wisc.edu\/\u223cane\/bucky\/.<\/jats:p>\n               <jats:p>Contact: \u00a0ane@stat.wisc.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq539","type":"journal-article","created":{"date-parts":[[2010,9,23]],"date-time":"2010-09-23T00:31:47Z","timestamp":1285201907000},"page":"2910-2911","source":"Crossref","is-referenced-by-count":395,"title":["BUCKy: Gene tree\/species tree reconciliation with Bayesian concordance analysis"],"prefix":"10.1093","volume":"26","author":[{"given":"Bret R.","family":"Larget","sequence":"first","affiliation":[{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"},{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"}]},{"given":"Satish K.","family":"Kotha","sequence":"additional","affiliation":[{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"}]},{"given":"Colin N.","family":"Dewey","sequence":"additional","affiliation":[{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"},{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"}]},{"given":"C\u00e9cile","family":"An\u00e9","sequence":"additional","affiliation":[{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"},{"name":"1 Department of Statistics, 2Department of Botany, 3Department of Computer Sciences and 4Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, WI 53706, USA"}]}],"member":"286","published-online":{"date-parts":[[2010,9,21]]},"reference":[{"key":"2023012507554940400_B1","article-title":"Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent","author":"Allman","year":"2010","journal-title":"J. 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