{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,24]],"date-time":"2026-04-24T21:00:08Z","timestamp":1777064408547,"version":"3.51.4"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2176,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism (SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.<\/jats:p>\n               <jats:p>Availability: Flapjack is freely available for Microsoft Windows, Mac OS X, Linux and Solaris, and can be downloaded from http:\/\/bioinf.scri.ac.uk\/flapjack<\/jats:p>\n               <jats:p>Contact: \u00a0flapjack@scri.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq580","type":"journal-article","created":{"date-parts":[[2010,12,1]],"date-time":"2010-12-01T08:08:45Z","timestamp":1291190925000},"page":"3133-3134","source":"Crossref","is-referenced-by-count":175,"title":["Flapjack\u2014graphical genotype visualization"],"prefix":"10.1093","volume":"26","author":[{"given":"Iain","family":"Milne","sequence":"first","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"Paul","family":"Shaw","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"Gordon","family":"Stephen","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"Micha","family":"Bayer","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"Linda","family":"Cardle","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"William T. B.","family":"Thomas","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"Andrew J.","family":"Flavell","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]},{"given":"David","family":"Marshall","sequence":"additional","affiliation":[{"name":"1 Genetics Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA and 2Division of Plant Sciences, University of Dundee at SCRI, Invergowrie, Dundee DD2 5DA, UK"}]}],"member":"286","published-online":{"date-parts":[[2010,10,18]]},"reference":[{"key":"2023012508033229500_B1","doi-asserted-by":"crossref","first-page":"D947","DOI":"10.1093\/nar\/gkm968","article-title":"Gramene: a growing plant comparative genomics resource","volume":"36","author":"Liang","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"2023012508033229500_B2","doi-asserted-by":"crossref","first-page":"737","DOI":"10.1126\/science.1174320","article-title":"Genetic properties of the maize nested association mapping population","volume":"325","author":"McMullen","year":"2009","journal-title":"Science"},{"key":"2023012508033229500_B3","doi-asserted-by":"crossref","first-page":"632","DOI":"10.1093\/bioinformatics\/14.7.632","article-title":"QU-GENE: a platform for quantitative analysis of genetic models","volume":"14","author":"Podlich","year":"1998","journal-title":"Bioinformatics"},{"key":"2023012508033229500_B4","doi-asserted-by":"crossref","first-page":"18656","DOI":"10.1073\/pnas.0606133103","article-title":"Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties","volume":"103","author":"Rostoks","year":"2006","journal-title":"Proc. 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Genet."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/24\/3133\/48855551\/bioinformatics_26_24_3133.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/26\/24\/3133\/48855551\/bioinformatics_26_24_3133.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T08:06:15Z","timestamp":1674633975000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/26\/24\/3133\/288306"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,10,18]]},"references-count":6,"journal-issue":{"issue":"24","published-print":{"date-parts":[[2010,12,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq580","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2010,12,15]]},"published":{"date-parts":[[2010,10,18]]}}}