{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,9]],"date-time":"2026-07-09T15:03:28Z","timestamp":1783609408615,"version":"3.55.0"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"23","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2180,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2010,12,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: OmicsAnalyzer is a Cytoscape plug-in for visual omics-based network analysis that (i) integrates hetero-omics data for one or more species; (ii) performs statistical tests on the integrated datasets; and (iii) visualizes results in a network context.<\/jats:p>\n               <jats:p>Availability: Implemented in Java, OmicsAnalyzer runs with Cytoscape 2.6 and 2.7. Binaries, documentation and video walkthroughs are freely available at http:\/\/vrac.iastate.edu\/~jlv\/omicsanalyzer\/<\/jats:p>\n               <jats:p>Contact: \u00a0julied@iastate.edu; netscape@iastate.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq583","type":"journal-article","created":{"date-parts":[[2010,10,19]],"date-time":"2010-10-19T00:15:50Z","timestamp":1287447350000},"page":"2995-2996","source":"Crossref","is-referenced-by-count":20,"title":["OmicsAnalyzer: a Cytoscape plug-in suite for modeling omics data"],"prefix":"10.1093","volume":"26","author":[{"given":"Tian","family":"Xia","sequence":"first","affiliation":[{"name":"1 Program of Bioinformatics and Computational Biology and 2Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"John V.","family":"Hemert","sequence":"additional","affiliation":[{"name":"1 Program of Bioinformatics and Computational Biology and 2Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Julie A.","family":"Dickerson","sequence":"additional","affiliation":[{"name":"1 Program of Bioinformatics and Computational Biology and 2Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA"},{"name":"1 Program of Bioinformatics and Computational Biology and 2Department of Electrical and Computer Engineering, Iowa State University, Ames, IA 50011, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2010,10,14]]},"reference":[{"key":"2023012507525968300_B1","doi-asserted-by":"crossref","first-page":"92","DOI":"10.1038\/nature02456","article-title":"Integrating high-throughput and computational data elucidates bacterial networks","volume":"429","author":"Covert","year":"2004","journal-title":"Nature"},{"key":"2023012507525968300_B2","author":"Gilbert","year":"2007","journal-title":"JFreeChart, a free java class library for generating charts."},{"key":"2023012507525968300_B3","doi-asserted-by":"crossref","first-page":"593","DOI":"10.1126\/science.1132067","article-title":"Multiple high-throughput analyses monitor the response of E. coli to perturbations","volume":"316","author":"Ishii","year":"2007","journal-title":"Science"},{"key":"2023012507525968300_B4","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1186\/1471-2105-7-109","article-title":"VANTED: a system for advanced data analysis and visualization in the context of biological networks","volume":"7","author":"Junker","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023012507525968300_B5","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1186\/1752-0509-2-21","article-title":"The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response","volume":"2","author":"Samal","year":"2008","journal-title":"BMC Syst. 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