{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,4,1]],"date-time":"2024-04-01T06:41:20Z","timestamp":1711953680833},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,1,15]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Summary: TE Displayer can be used to retrieve genetic polymorphisms caused by transposable elements (TEs) in large-genomic datasets and present the results on virtual gel images. This enables researchers to compare TE profiles in silico and provides reference profiles for experimental analyses.<\/jats:p><jats:p>Availability and implementation: Freely available on the web at http:\/\/labs.csb.utoronto.ca\/yang\/TE_Displayer.<\/jats:p><jats:p>Contact: \u00a0gage.yang@utoronto.ca<\/jats:p><jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq639","type":"journal-article","created":{"date-parts":[[2010,11,13]],"date-time":"2010-11-13T01:20:02Z","timestamp":1289611202000},"page":"286-287","source":"Crossref","is-referenced-by-count":3,"title":["TE Displayer for post-genomic analysis of transposable elements"],"prefix":"10.1093","volume":"27","author":[{"given":"Rebecca","family":"Rooke","sequence":"first","affiliation":[{"name":"1 Department of Cell and Systems Biology, University of Toronto, Toronto, M5S 1A1 and 2Department of Biology, University of Toronto at Mississauga, Mississauga, L5L 1C6, Canada"},{"name":"1 Department of Cell and Systems Biology, University of Toronto, Toronto, M5S 1A1 and 2Department of Biology, University of Toronto at Mississauga, Mississauga, L5L 1C6, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Guojun","family":"Yang","sequence":"additional","affiliation":[{"name":"1 Department of Cell and Systems Biology, University of Toronto, Toronto, M5S 1A1 and 2Department of Biology, University of Toronto at Mississauga, Mississauga, L5L 1C6, Canada"},{"name":"1 Department of Cell and Systems Biology, University of Toronto, Toronto, M5S 1A1 and 2Department of Biology, University of Toronto at Mississauga, Mississauga, L5L 1C6, Canada"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2010,11,11]]},"reference":[{"key":"2023012512181051200_B1","doi-asserted-by":"crossref","first-page":"826","DOI":"10.1038\/382826a0","article-title":"Positional cloning of the mouse retrovirus restriction gene Fvl","volume":"382","author":"Best","year":"1996","journal-title":"Nature"},{"key":"2023012512181051200_B2","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1046\/j.1365-313X.1998.00004.x","article-title":"Transposon display identifies individual transposable elements in high copy number lines","volume":"13","author":"den Broeck","year":"1998","journal-title":"Plant J."},{"key":"2023012512181051200_B3","doi-asserted-by":"crossref","first-page":"163","DOI":"10.1038\/nature01214","article-title":"An active DNA transposon in rice","volume":"421","author":"Jiang","year":"2003","journal-title":"Nature"},{"key":"2023012512181051200_B4","doi-asserted-by":"crossref","first-page":"7704","DOI":"10.1073\/pnas.94.15.7704","article-title":"Transposable elements as sources of variation in animals and plants","volume":"94","author":"Kidwell","year":"1997","journal-title":"Proc Natl Acad. Sci. USA"},{"key":"2023012512181051200_B5","doi-asserted-by":"crossref","first-page":"101","DOI":"10.4161\/fly.6393","article-title":"Drosophila telomeres: a variation on the telomerase theme","volume":"2","author":"Pardue","year":"2008","journal-title":"Fly"},{"key":"2023012512181051200_B6","doi-asserted-by":"crossref","first-page":"R46","DOI":"10.1186\/gb-2010-11-4-r46","article-title":"DNA transposons and the role of recombination in mutation accumulation","volume":"11","author":"Schaack","year":"2010","journal-title":"Daphnia pulex. Genome Biol."},{"key":"2023012512181051200_B7","doi-asserted-by":"crossref","first-page":"1073","DOI":"10.1007\/s00018-009-8376-3","article-title":"Molecular domestication of transposable elements: from detrimental parasites to useful host genes","volume":"66","author":"Sinzelle","year":"2009","journal-title":"Cell. Mol. Life Sci."},{"key":"2023012512181051200_B8","doi-asserted-by":"crossref","first-page":"461","DOI":"10.1016\/j.cell.2008.12.038","article-title":"Epigenetic reprogramming and small RNA silencing of transposable elements in pollen","volume":"136","author":"Slotkin","year":"2009","journal-title":"Cell"},{"key":"2023012512181051200_B9","doi-asserted-by":"crossref","first-page":"643","DOI":"10.1007\/s00239-008-9118-0","article-title":"The association between breeding system and transposable element dynamics","volume":"66","author":"Valizadeh","year":"2008","journal-title":"Daphnia Pulex. J. Mol. Evol."},{"key":"2023012512181051200_B10","doi-asserted-by":"crossref","first-page":"4407","DOI":"10.1093\/nar\/23.21.4407","article-title":"AFLP. A new technique for DNA fingerprinting","volume":"23","author":"Vos","year":"1995","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/2\/286\/48869978\/bioinformatics_27_2_286.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/2\/286\/48869978\/bioinformatics_27_2_286.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,4,1]],"date-time":"2024-04-01T06:03:51Z","timestamp":1711951431000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/27\/2\/286\/285802"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2010,11,11]]},"references-count":10,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2011,1,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btq639","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2011,1,15]]},"published":{"date-parts":[[2010,11,11]]}}}