{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T05:49:29Z","timestamp":1761630569919},"reference-count":2,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2016,10,6]],"date-time":"2016-10-06T00:00:00Z","timestamp":1475712000000},"content-version":"vor","delay-in-days":2100,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: MADGene is a software environment comprising a web-based database and a java application. This platform aims at unifying gene identifiers (ids) and performing gene set analysis. MADGene allows the user to perform inter-conversion of clone and gene ids over a large range of nomenclatures relative to 17 species. We propose a set of 23 functions to facilitate the analysis of gene sets and we give two microarray applications to show how MADGene can be used to conduct meta-analyses.<\/jats:p>\n               <jats:p>Availability: The MADGene resources are freely available online from http:\/\/www.madtools.org, a website dedicated to the analysis and annotation of DNA microarray data.<\/jats:p>\n               <jats:p>Contact: \u00a0gerard.ramstein@univ-nantes.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btq710","type":"journal-article","created":{"date-parts":[[2011,1,8]],"date-time":"2011-01-08T01:26:38Z","timestamp":1294449998000},"page":"725-726","source":"Crossref","is-referenced-by-count":33,"title":["MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets"],"prefix":"10.1093","volume":"27","author":[{"given":"Daniel","family":"Baron","sequence":"first","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Audrey","family":"Bihou\u00e9e","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Raluca","family":"Teusan","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Emeric","family":"Dubois","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Fr\u00e9d\u00e9rique","family":"Savagner","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Marja","family":"Steenman","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"R\u00e9mi","family":"Houlgatte","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"G\u00e9rard","family":"Ramstein","sequence":"additional","affiliation":[{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"},{"name":"1 INSERM U915, IRT-UN and 2LINA - COD, University of Nantes, France"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,1,6]]},"reference":[{"key":"2023012511571938000_B1","first-page":"210","article-title":"DNA microarrays","volume":"28","author":"Baron","year":"2007","journal-title":"Ing\u00e9nierie et Recherche Biomedicale"},{"key":"2023012511571938000_B2","doi-asserted-by":"crossref","first-page":"15545","DOI":"10.1073\/pnas.0506580102","article-title":"Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles","volume":"102","author":"Subramanian","year":"2005","journal-title":"Proc. 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