{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T17:38:53Z","timestamp":1775324333601,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: Modern sequencing instruments are able to generate at least hundreds of millions short reads of genomic data. Those huge volumes of data require effective means to store them, provide quick access to any record and enable fast decompression.<\/jats:p>\n               <jats:p>Results: We present a specialized compression algorithm for genomic data in FASTQ format which dominates its competitor, G-SQZ, as is shown on a number of datasets from the 1000 Genomes Project (www.1000genomes.org).<\/jats:p>\n               <jats:p>Availability: DSRC is freely available at http:\/sun.aei.polsl.pl\/dsrc.<\/jats:p>\n               <jats:p>Contact: \u00a0sebastian.deorowicz@polsl.pl<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr014","type":"journal-article","created":{"date-parts":[[2011,1,21]],"date-time":"2011-01-21T01:28:28Z","timestamp":1295573308000},"page":"860-862","source":"Crossref","is-referenced-by-count":130,"title":["Compression of DNA sequence reads in FASTQ format"],"prefix":"10.1093","volume":"27","author":[{"given":"Sebastian","family":"Deorowicz","sequence":"first","affiliation":[{"name":"1 Institute of Informatics, Silesian University of Technology, Akademicka 16, 44\u2212100 Gliwice and 2Computer Engineering Department, Technical University of \u0141\u00f3d\u017a, Al. Politechniki 11, 90-924 \u0141\u00f3d\u017a, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Szymon","family":"Grabowski","sequence":"additional","affiliation":[{"name":"1 Institute of Informatics, Silesian University of Technology, Akademicka 16, 44\u2212100 Gliwice and 2Computer Engineering Department, Technical University of \u0141\u00f3d\u017a, Al. Politechniki 11, 90-924 \u0141\u00f3d\u017a, Poland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,1,19]]},"reference":[{"key":"2023012511540169100_B1","doi-asserted-by":"crossref","first-page":"1696","DOI":"10.1093\/bioinformatics\/18.12.1696","article-title":"DNACompress: fast and effective DNA sequence compression","volume":"18","author":"Chen","year":"2002","journal-title":"Bioinformatics"},{"key":"2023012511540169100_B2","doi-asserted-by":"crossref","first-page":"1767","DOI":"10.1093\/nar\/gkp1137","article-title":"The Sanger FASTQ file format for sequences with quality scores, and the Solexa\/Illumina FASTQ variants","volume":"38","author":"Cock","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"2023012511540169100_B3","doi-asserted-by":"crossref","first-page":"1575","DOI":"10.1093\/bioinformatics\/btp117","article-title":"Textual data compression in computational biology: a synopsis","volume":"25","author":"Giancarlo","year":"2009","journal-title":"Bioinformatics"},{"key":"2023012511540169100_B4","doi-asserted-by":"crossref","first-page":"875","DOI":"10.1016\/0306-4573(94)90014-0","article-title":"A new challenge for compression algorithms: genetic sequences","volume":"30","author":"Grumbach","year":"1994","journal-title":"Inf. Process. Manage."},{"key":"2023012511540169100_B5","doi-asserted-by":"crossref","first-page":"201","DOI":"10.1007\/978-3-642-16321-0_20","article-title":"Relative Lempel-Ziv compression of genomes for large-scale storage and retrieval","volume":"6393","author":"Kuruppu","year":"2010","journal-title":"Lect. Notes Comput. Sci."},{"key":"2023012511540169100_B6","doi-asserted-by":"crossref","first-page":"2192","DOI":"10.1093\/bioinformatics\/btq346","article-title":"G-SQZ: compact encoding of genomic sequence and quality data","volume":"26","author":"Tembe","year":"2010","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/6\/860\/48863301\/bioinformatics_27_6_860.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/6\/860\/48863301\/bioinformatics_27_6_860.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T11:54:34Z","timestamp":1674647674000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/27\/6\/860\/235075"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,1,19]]},"references-count":6,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2011,3,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btr014","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2011,3,15]]},"published":{"date-parts":[[2011,1,19]]}}}