{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T00:02:21Z","timestamp":1772064141781,"version":"3.50.1"},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: PiNGO is a tool to screen biological networks for candidate genes, i.e. genes predicted to be involved in a biological process of interest. The user can narrow the search to genes with particular known functions or exclude genes belonging to particular functional classes. PiNGO provides support for a wide range of organisms and Gene Ontology classification schemes, and it can easily be customized for other organisms and functional classifications. PiNGO is implemented as a plugin for Cytoscape, a popular network visualization platform.<\/jats:p>\n               <jats:p>Availability: PiNGO is distributed as an open-source Java package under the GNU General Public License (http:\/\/www.gnu.org\/), and can be downloaded via the Cytoscape plugin manager. A detailed user guide and tutorial are available on the PiNGO website (http:\/\/www.psb.ugent.be\/esb\/PiNGO.<\/jats:p>\n               <jats:p>Contact: \u00a0steven.maere@psb.vib-ugent.be<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr045","type":"journal-article","created":{"date-parts":[[2011,1,29]],"date-time":"2011-01-29T02:52:41Z","timestamp":1296269561000},"page":"1030-1031","source":"Crossref","is-referenced-by-count":42,"title":["PiNGO: a Cytoscape plugin to find candidate genes in biological networks"],"prefix":"10.1093","volume":"27","author":[{"given":"Michael","family":"Smoot","sequence":"first","affiliation":[{"name":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Keiichiro","family":"Ono","sequence":"additional","affiliation":[{"name":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Trey","family":"Ideker","sequence":"additional","affiliation":[{"name":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Steven","family":"Maere","sequence":"additional","affiliation":[{"name":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"},{"name":"1 Departments of Bioengineering and Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 2Department of Plant Systems Biology, VIB and 3Department of Plant Biotechnology and Genetics, Ghent University, Technologiepark 927, B-9052 Ghent, Belgium"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2011,1,28]]},"reference":[{"key":"2023012512161931900_B1","doi-asserted-by":"crossref","first-page":"537","DOI":"10.1038\/nbt1203","article-title":"Gene prioritization through genomic data fusion","volume":"24","author":"Aerts","year":"2006","journal-title":"Nat. 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