{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,29]],"date-time":"2025-09-29T15:32:38Z","timestamp":1759159958061},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2062,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.5"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: GeneReporter is a web tool that reports functional information and relevant literature on a protein-coding sequence of interest. Its purpose is to support both manual genome annotation and document retrieval. PubMed references corresponding to a sequence are detected by the extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains, potential cofactors, structure, function, cellular localization, metabolic contribution and corresponding DNA binding sites complement the information on a given gene product of interest.<\/jats:p>\n               <jats:p>Availability and implementation: GeneReporter is available at http:\/\/www.genereporter.tu-bs.de. The web site integrates databases and analysis tools as SOAP-based web services from the EBI (European Bioinformatics Institute) and NCBI (National Center for Biotechnology Information).<\/jats:p>\n               <jats:p>Contact: \u00a0i.retter@tu-bs.de; ida.retter@helmholtz-hzi.de<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr047","type":"journal-article","created":{"date-parts":[[2011,2,11]],"date-time":"2011-02-11T01:35:13Z","timestamp":1297388113000},"page":"1034-1035","source":"Crossref","is-referenced-by-count":4,"title":["GeneReporter\u2014sequence-based document retrieval and annotation"],"prefix":"10.1093","volume":"27","author":[{"given":"Annekathrin","family":"Bartsch","sequence":"first","affiliation":[{"name":"1 Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, 38106 Braunschweig and 2Cellular Proteomics Group, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 Braunschweig, Germany"}]},{"given":"Boyke","family":"Bunk","sequence":"additional","affiliation":[{"name":"1 Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, 38106 Braunschweig and 2Cellular Proteomics Group, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 Braunschweig, Germany"}]},{"given":"Isam","family":"Haddad","sequence":"additional","affiliation":[{"name":"1 Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, 38106 Braunschweig and 2Cellular Proteomics Group, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 Braunschweig, Germany"}]},{"given":"Johannes","family":"Klein","sequence":"additional","affiliation":[{"name":"1 Institute for Microbiology, Technische Universit\u00e4t Braunschweig, Spielmannstr. 7, 38106 Braunschweig and 2Cellular Proteomics Group, Helmholtz Centre for Infection Research, Inhoffenstr. 7, 38124 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