{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T19:11:47Z","timestamp":1675278707931},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2074,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.5"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The Ensembl database makes genomic features available via its Genome Browser. It is also possible to access the underlying data through a Perl API for advanced querying. We have developed a full-featured Ruby API to the Ensembl databases, providing the same functionality as the Perl interface with additional features. A single Ruby API is used to access different releases of the Ensembl databases and is also able to query multi-species databases.<\/jats:p>\n               <jats:p>Availability and Implementation: Most functionality of the API is provided using the ActiveRecord pattern. The library depends on introspection to make it release independent. The API is available through the Rubygem system and can be installed with the command gem install ruby-ensembl-api.<\/jats:p>\n               <jats:p>Contact: \u00a0jan.aerts@esat.kuleuven.be<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr050","type":"journal-article","created":{"date-parts":[[2011,1,29]],"date-time":"2011-01-29T02:52:41Z","timestamp":1296269561000},"page":"1013-1014","source":"Crossref","is-referenced-by-count":9,"title":["A Ruby API to query the Ensembl database for genomic features"],"prefix":"10.1093","volume":"27","author":[{"given":"Francesco","family":"Strozzi","sequence":"first","affiliation":[{"name":"1 Parco Tecnologico Padano, Via Einstein Loc. Cascina Codazza 26900 Lodi, Italy and 2Faculty of Engineering - ESAT\/SCD, Leuven University, Kasteelpark Arenberg 10 - bus 2446, 3001 Leuven, Belgium"}]},{"given":"Jan","family":"Aerts","sequence":"additional","affiliation":[{"name":"1 Parco Tecnologico Padano, Via Einstein Loc. Cascina Codazza 26900 Lodi, Italy and 2Faculty of Engineering - ESAT\/SCD, Leuven University, Kasteelpark Arenberg 10 - bus 2446, 3001 Leuven, Belgium"}]}],"member":"286","published-online":{"date-parts":[[2011,1,28]]},"reference":[{"key":"2023012512163318200_B1","doi-asserted-by":"crossref","first-page":"221","DOI":"10.1186\/1471-2105-10-221","article-title":"An introduction to scripting in Ruby for biologists","volume":"10","author":"Aerts","year":"2009","journal-title":"BMC Bioinf."},{"key":"2023012512163318200_B2","doi-asserted-by":"crossref","first-page":"1422","DOI":"10.1093\/bioinformatics\/btp163","article-title":"Biopython: freely available Python tools for computational molecular biology and bioinformatics","volume":"25","author":"Cock","year":"2009","journal-title":"Bioinformatics"},{"issue":"Suppl. 1","key":"2023012512163318200_B3","first-page":"D800","article-title":"Ensembl 2011","volume":"39","author":"Flicek","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"2023012512163318200_B4","article-title":"The UCSC Genome Browser database: update 2011","author":"Fujita","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"2023012512163318200_B5","doi-asserted-by":"crossref","first-page":"2617","DOI":"10.1093\/bioinformatics\/btq475","article-title":"BioRuby: bioinformatics software for the Ruby programming language","volume":"26","author":"Goto","year":"2010","journal-title":"Bioinformatics"},{"key":"2023012512163318200_B6","doi-asserted-by":"crossref","first-page":"W23","DOI":"10.1093\/nar\/gkp265","article-title":"BioMart Central Portal - unified access to biological data","volume":"37","author":"Haider","year":"2009","journal-title":"Nucleic Acids Res."},{"key":"2023012512163318200_B7","doi-asserted-by":"crossref","first-page":"D563","DOI":"10.1093\/nar\/gkp871","article-title":"Ensembl Genomes: extending Ensembl across the taxonomic space","volume":"38","author":"Kersey","year":"2010","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/7\/1013\/48868118\/bioinformatics_27_7_1013.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/7\/1013\/48868118\/bioinformatics_27_7_1013.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T14:39:22Z","timestamp":1674657562000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/27\/7\/1013\/231629"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,1,28]]},"references-count":7,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2011,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btr050","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2011,4,1]]},"published":{"date-parts":[[2011,1,28]]}}}