{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,4]],"date-time":"2026-04-04T02:30:10Z","timestamp":1775269810416,"version":"3.50.1"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: There is a strong and growing need in the biology research community for accurate, automated image analysis. Here, we describe CellProfiler 2.0, which has been engineered to meet the needs of its growing user base. It is more robust and user friendly, with new algorithms and features to facilitate high-throughput work. ImageJ plugins can now be run within a CellProfiler pipeline.<\/jats:p>\n               <jats:p>Availability and Implementation: CellProfiler 2.0 is free and open source, available at http:\/\/www.cellprofiler.org under the GPL v. 2 license. It is available as a packaged application for Macintosh OS X and Microsoft Windows and can be compiled for Linux.<\/jats:p>\n               <jats:p>Contact: \u00a0anne@broadinstitute.org<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr095","type":"journal-article","created":{"date-parts":[[2011,2,25]],"date-time":"2011-02-25T01:38:20Z","timestamp":1298597900000},"page":"1179-1180","source":"Crossref","is-referenced-by-count":944,"title":["Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software"],"prefix":"10.1093","volume":"27","author":[{"given":"Lee","family":"Kamentsky","sequence":"first","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Thouis R.","family":"Jones","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Adam","family":"Fraser","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Mark-Anthony","family":"Bray","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"David J.","family":"Logan","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Katherine L.","family":"Madden","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Vebjorn","family":"Ljosa","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Curtis","family":"Rueden","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Kevin W.","family":"Eliceiri","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]},{"given":"Anne E.","family":"Carpenter","sequence":"additional","affiliation":[{"name":"1 Imaging Platform, Broad Institute of Harvard and MIT, Cambridge, MA 02142 and 2Laboratory for Optical and Computational Instrumentation, University of Wisconsin, Madison, WI 53706, USA"}]}],"member":"286","published-online":{"date-parts":[[2011,2,23]]},"reference":[{"key":"2023061311475731400_B1","doi-asserted-by":"crossref","first-page":"R100","DOI":"10.1186\/gb-2006-7-10-r100","article-title":"CellProfiler: image analysis software for identifying and quantifying cell phenotypes","volume":"7","author":"Carpenter","year":"2006","journal-title":"Genome Biol."},{"key":"2023061311475731400_B2","doi-asserted-by":"crossref","first-page":"695","DOI":"10.1038\/nmeth.1237","article-title":"Robust single-particle tracking in live-cell time-lapse sequences","volume":"5","author":"Jaqaman","year":"2008","journal-title":"Nat. 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