{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,9]],"date-time":"2026-01-09T12:44:48Z","timestamp":1767962688316,"version":"3.49.0"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"12","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,6,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The Signaling Gateway Molecule Pages (SGMP) database provides highly structured data on proteins which exist in different functional states participating in signal transduction pathways. A molecule page starts with a state of a native protein, without any modification and\/or interactions. New states are formed with every post-translational modification or interaction with one or more proteins, small molecules or class molecules and with each change in cellular location. State transitions are caused by a combination of one or more modifications, interactions and translocations which then might be associated with one or more biological processes. In a characterized biological state, a molecule can function as one of several entities or their combinations, including channel, receptor, enzyme, transcription factor and transporter. We have also exported SGMP data to the Biological Pathway Exchange (BioPAX) and Systems Biology Markup Language (SBML) as well as in our custom XML.<\/jats:p>\n               <jats:p>Availability: SGMP is available at www.signaling-gateway.org\/molecule.<\/jats:p>\n               <jats:p>Contact: \u00a0shankar@ucsd.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr190","type":"journal-article","created":{"date-parts":[[2011,4,20]],"date-time":"2011-04-20T04:06:58Z","timestamp":1303272418000},"page":"1736-1738","source":"Crossref","is-referenced-by-count":27,"title":["Signaling gateway molecule pages\u2014a data model perspective"],"prefix":"10.1093","volume":"27","author":[{"given":"Ashok Reddy","family":"Dinasarapu","sequence":"first","affiliation":[{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"}]},{"given":"Brian","family":"Saunders","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"}]},{"given":"Iley","family":"Ozerlat","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"}]},{"given":"Kenan","family":"Azam","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"}]},{"given":"Shankar","family":"Subramaniam","sequence":"additional","affiliation":[{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"},{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"},{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"},{"name":"1 Department of Bioengineering, 2San Diego Super Computer Center, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA, 3Nature Publishing Group, The Macmillan Building, 4 Crinan Street, London N1 9XW, UK, 4Department of Chemistry and Biochemistry and 5Department of Cellular and Molecular Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA"}]}],"member":"286","published-online":{"date-parts":[[2011,4,19]]},"reference":[{"key":"2023012511152104300_B1","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. 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