{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T17:56:55Z","timestamp":1776016615410,"version":"3.50.1"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"15","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: nucleR is an R\/Bioconductor package for a flexible and fast recognition of nucleosome positioning from next generation sequencing and tiling arrays experiments. The software is integrated with standard high-throughput genomics R packages and allows for in situ visualization as well as to export results to common genome browser formats.<\/jats:p>\n               <jats:p>Availability: Additional information and methodological details can be found at http:\/\/mmb.pcb.ub.es\/nucleR<\/jats:p>\n               <jats:p>Contact: \u00a0modesto.orozco@irbbarcelona.org<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr345","type":"journal-article","created":{"date-parts":[[2011,6,9]],"date-time":"2011-06-09T00:23:48Z","timestamp":1307579028000},"page":"2149-2150","source":"Crossref","is-referenced-by-count":84,"title":["nucleR: a package for non-parametric nucleosome positioning"],"prefix":"10.1093","volume":"27","author":[{"given":"Oscar","family":"Flores","sequence":"first","affiliation":[{"name":"1 IRB\u2212BSC Joint Research Program on Computational Biology, Institute of Research in Biomedicine, Baldiri i Reixac 10, 2Department of Biochemistry and Molecular Biology, University of Barcelona, Avinguda Diagonal 645 and 3Instituto Nacional de Bioinform\u00e1tica. Parc Cient\u00edfic de Barcelona. Baldiri i Reixac 10, Barcelona 08028, Spain"}]},{"given":"Modesto","family":"Orozco","sequence":"additional","affiliation":[{"name":"1 IRB\u2212BSC Joint Research Program on Computational Biology, Institute of Research in Biomedicine, Baldiri i Reixac 10, 2Department of Biochemistry and Molecular Biology, University of Barcelona, Avinguda Diagonal 645 and 3Instituto Nacional de Bioinform\u00e1tica. Parc Cient\u00edfic de Barcelona. Baldiri i Reixac 10, Barcelona 08028, Spain"},{"name":"1 IRB\u2212BSC Joint Research Program on Computational Biology, Institute of Research in Biomedicine, Baldiri i Reixac 10, 2Department of Biochemistry and Molecular Biology, University of Barcelona, Avinguda Diagonal 645 and 3Instituto Nacional de Bioinform\u00e1tica. Parc Cient\u00edfic de Barcelona. Baldiri i Reixac 10, Barcelona 08028, Spain"},{"name":"1 IRB\u2212BSC Joint Research Program on Computational Biology, Institute of Research in Biomedicine, Baldiri i Reixac 10, 2Department of Biochemistry and Molecular Biology, University of Barcelona, Avinguda Diagonal 645 and 3Instituto Nacional de Bioinform\u00e1tica. Parc Cient\u00edfic de Barcelona. Baldiri i Reixac 10, Barcelona 08028, Spain"}]}],"member":"286","published-online":{"date-parts":[[2011,6,7]]},"reference":[{"key":"2023012511531668700_B1","doi-asserted-by":"crossref","first-page":"i334","DOI":"10.1093\/bioinformatics\/btq175","article-title":"A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data","volume":"26","author":"Chen","year":"2010","journal-title":"Bioinformatics"},{"key":"2023012511531668700_B2"},{"key":"2023012511531668700_B3","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1016\/j.ygeno.2008.09.012","article-title":"A multi-layer method to study genome-scale positions of nucleosomes","volume":"93","author":"Di Ges\u00f9","year":"2009","journal-title":"Genomics"},{"key":"2023012511531668700_B4","doi-asserted-by":"crossref","first-page":"161","DOI":"10.1038\/nrg2522","article-title":"Nucleosome positioning and gene regulation: advances through genomics","volume":"10","author":"Jiang","year":"2009","journal-title":"Nature Rev. 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