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We present an application for semi-automated tracing of neurons to quickly annotate noisy datasets and construct complex neuronal topologies, which we call the Simple Neurite Tracer.<\/jats:p>\n               <jats:p>Availability: Simple Neurite Tracer is open source software, licensed under the GNU General Public Licence (GPL) and based on the public domain image processing software ImageJ. The software and further documentation are available via http:\/\/fiji.sc\/Simple_Neurite_Tracer as part of the package Fiji, and can be used on Windows, Mac OS and Linux. Documentation and introductory screencasts are available at the same URL.<\/jats:p>\n               <jats:p>Contact: \u00a0longair@ini.phys.ethz.ch; longair@ini.phys.ethz.ch<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr390","type":"journal-article","created":{"date-parts":[[2011,7,5]],"date-time":"2011-07-05T00:36:08Z","timestamp":1309826168000},"page":"2453-2454","source":"Crossref","is-referenced-by-count":932,"title":["Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes"],"prefix":"10.1093","volume":"27","author":[{"given":"Mark H.","family":"Longair","sequence":"first","affiliation":[{"name":"1 Institute of Neuroinformatics, Uni\/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Dean A.","family":"Baker","sequence":"additional","affiliation":[{"name":"1 Institute of Neuroinformatics, Uni\/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"J. Douglas","family":"Armstrong","sequence":"additional","affiliation":[{"name":"1 Institute of Neuroinformatics, Uni\/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2011,7,4]]},"reference":[{"key":"2023012511524971900_B1","doi-asserted-by":"crossref","first-page":"49","DOI":"10.1016\/S0165-0270(98)00091-0","article-title":"An on-line archive of reconstructed hippocampal neurons","volume":"84","author":"Cannon","year":"1998","journal-title":"J. Neurosci. 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