{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,30]],"date-time":"2026-05-30T03:11:52Z","timestamp":1780110712599,"version":"3.54.0"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,9,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: SHAP (simple high-throughput annotation pipeline) is a lightweight and scalable sequence annotation pipeline capable of supporting research efforts that generate or utilize large volumes of DNA sequence data. The software provides Grid capable analysis, relational storage and Web-based full-text searching of annotation results. Implemented in Java, SHAP recognizes the limited resources of many smaller research groups.<\/jats:p>\n               <jats:p>Availability: Source code is freely available under GPLv3 at https:\/\/sourceforge.net\/projects\/shap.<\/jats:p>\n               <jats:p>Contact: \u00a0matt.demaere@unsw.edu.au; r.cavicchioli@unsw.edu.au<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr411","type":"journal-article","created":{"date-parts":[[2011,7,21]],"date-time":"2011-07-21T00:15:34Z","timestamp":1311207334000},"page":"2431-2432","source":"Crossref","is-referenced-by-count":3,"title":["Simple high-throughput annotation pipeline (SHAP)"],"prefix":"10.1093","volume":"27","author":[{"given":"Matthew Z.","family":"DeMaere","sequence":"first","affiliation":[{"name":"1 School of Biotechnology and Biomolecular Sciences and 2Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW 2052, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Federico M.","family":"Lauro","sequence":"additional","affiliation":[{"name":"1 School of Biotechnology and Biomolecular Sciences and 2Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW 2052, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Torsten","family":"Thomas","sequence":"additional","affiliation":[{"name":"1 School of Biotechnology and Biomolecular Sciences and 2Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW 2052, Australia"},{"name":"1 School of Biotechnology and Biomolecular Sciences and 2Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW 2052, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Sheree","family":"Yau","sequence":"additional","affiliation":[{"name":"1 School of Biotechnology and Biomolecular Sciences and 2Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW 2052, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ricardo","family":"Cavicchioli","sequence":"additional","affiliation":[{"name":"1 School of Biotechnology and Biomolecular Sciences and 2Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW 2052, Australia"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2011,7,19]]},"reference":[{"key":"2023012511532125000_B1","doi-asserted-by":"crossref","first-page":"2832","DOI":"10.1093\/bioinformatics\/bth273","article-title":"A system for automated bacterial (genome) integrated annotation\u2013SABIA","volume":"20","author":"Almeida","year":"2004","journal-title":"Bioinformatics"},{"key":"2023012511532125000_B2","doi-asserted-by":"crossref","first-page":"R44","DOI":"10.1186\/gb-2005-6-5-r44","article-title":"The Sequence Ontology: a tool for the unification of genome annotations","volume":"6","author":"Eilbeck","year":"2005","journal-title":"Genome Biol."},{"key":"2023012511532125000_B3","doi-asserted-by":"crossref","first-page":"1122","DOI":"10.1093\/bioinformatics\/btq090","article-title":"An Ergatis-based prokaryotic genome annotation web server","volume":"26","author":"Hemmerich","year":"2010","journal-title":"Bioinformatics"},{"key":"2023012511532125000_B4","doi-asserted-by":"crossref","first-page":"879","DOI":"10.1038\/ismej.2010.185","article-title":"An integrative study of a meromictic lake ecosystem in Antarctica","volume":"5","author":"Lauro","year":"2011","journal-title":"ISME J."},{"key":"2023012511532125000_B5","doi-asserted-by":"crossref","first-page":"2187","DOI":"10.1093\/nar\/gkg312","article-title":"GenDB\u2013an open source genome annotation system for prokaryote genomes","volume":"31","author":"Meyer","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"2023012511532125000_B6","doi-asserted-by":"crossref","first-page":"1002","DOI":"10.1038\/ismej.2010.28","article-title":"Metaproteogenomic analysis of a dominant green sulfur bacterium from Ace Lake, Antarctica","volume":"4","author":"Ng","year":"2010","journal-title":"ISME J."},{"key":"2023012511532125000_B7","volume-title":"A SLOC counting standard.","author":"Nguyen","year":"2007"},{"key":"2023012511532125000_B8","doi-asserted-by":"crossref","first-page":"1488","DOI":"10.1093\/bioinformatics\/btq167","article-title":"Ergatis: a web interface and scalable software system for bioinformatics workflows","volume":"26","author":"Orvis","year":"2010","journal-title":"Bioinformatics"},{"key":"2023012511532125000_B9","doi-asserted-by":"crossref","first-page":"23","DOI":"10.1109\/2.876288","article-title":"An empirical comparison of seven programming languages","volume":"33","author":"Prechelt","year":"2000","journal-title":"IEEE Computer"},{"key":"2023012511532125000_B10","doi-asserted-by":"crossref","first-page":"6163","DOI":"10.1073\/pnas.1018221108","article-title":"Virophage control of Antarctic algal host\u2013virus dynamics","volume":"108","author":"Yau","year":"2011","journal-title":"Proc. Natl Acad. Sci. USA"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/17\/2431\/48865242\/bioinformatics_27_17_2431.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/27\/17\/2431\/48865242\/bioinformatics_27_17_2431.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T11:58:54Z","timestamp":1674647934000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/27\/17\/2431\/224649"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,7,19]]},"references-count":10,"journal-issue":{"issue":"17","published-print":{"date-parts":[[2011,9,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btr411","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2011,9,1]]},"published":{"date-parts":[[2011,7,19]]}}}