{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,1]],"date-time":"2025-11-01T13:38:37Z","timestamp":1762004317566},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"19","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: NetDS is a novel Cytoscape plugin that conveniently simulates dynamics related to robustness, and examines structural properties with respect to feedforward\/feedback loops. It can evaluate how robustly a network sustains a stable state against mutations by employing a Boolean network model. In addition, the plugin can examine all feedforward\/feedback loops appearing in a network and determine whether or not a pair of loops is coupled. Random networks can also be generated to evaluate whether or not an interesting finding in real biological networks is significantly random.<\/jats:p>\n               <jats:p>Availability: NetDS is freely available for non-commercial purposes at http:\/\/netds.sourceforge.net\/.<\/jats:p>\n               <jats:p>Contact: \u00a0kwonyk@ulsan.ac.kr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr466","type":"journal-article","created":{"date-parts":[[2011,8,10]],"date-time":"2011-08-10T00:42:31Z","timestamp":1312936951000},"page":"2767-2768","source":"Crossref","is-referenced-by-count":26,"title":["NetDS: a Cytoscape plugin to analyze the robustness of dynamics and feedforward\/feedback loop structures of biological networks"],"prefix":"10.1093","volume":"27","author":[{"given":"Duc-Hau","family":"Le","sequence":"first","affiliation":[{"name":"School of Electrical Engineering, University of Ulsan, 93, Daehak-ro, Nam-gu, Ulsan 680-749"}]},{"given":"Yung-Keun","family":"Kwon","sequence":"additional","affiliation":[{"name":"School of Electrical Engineering, University of Ulsan, 93, Daehak-ro, Nam-gu, Ulsan 680-749"}]}],"member":"286","published-online":{"date-parts":[[2011,8,9]]},"reference":[{"key":"2023012512005780300_B1","doi-asserted-by":"crossref","first-page":"2","DOI":"10.1186\/1471-2105-4-2","article-title":"An automated method for finding molecular complexes in large protein interaction networks","volume":"4","author":"Bader","year":"2003","journal-title":"BMC Bioinformatics"},{"key":"2023012512005780300_B2","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1126\/science.286.5439.509","article-title":"Emergence of scaling in random networks","volume":"286","author":"Barabasi","year":"1999","journal-title":"Science"},{"key":"2023012512005780300_B3","doi-asserted-by":"crossref","first-page":"290","DOI":"10.5486\/PMD.1959.6.3-4.12","article-title":"On random graphs, I","volume":"6","author":"Erd\u00f6s","year":"1959","journal-title":"Publicationes Mathematicae"},{"key":"2023012512005780300_B4","doi-asserted-by":"crossref","first-page":"910","DOI":"10.1093\/bioinformatics\/btm032","article-title":"NetMatch: a Cytoscape plugin for searching biological networks","volume":"23","author":"Ferro","year":"2007","journal-title":"Bioinformatics"},{"key":"2023012512005780300_B5","doi-asserted-by":"crossref","first-page":"91","DOI":"10.1006\/excr.2000.5044","article-title":"Shape-dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks","volume":"261","author":"Huang","year":"2000","journal-title":"Exp. 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