{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,29]],"date-time":"2026-03-29T07:13:30Z","timestamp":1774768410756,"version":"3.50.1"},"reference-count":17,"publisher":"Oxford University Press (OUP)","issue":"20","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,10,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Herein we present COCOMAPS, a novel tool for analyzing, visualizing and comparing the interface in protein\u2013protein and protein\u2013nucleic acids complexes. COCOMAPS combines traditional analyses and 3D visualization of the interface with the effectiveness of intermolecular contact maps.<\/jats:p>\n               <jats:p>Availability: COCOMAPS is accessible as a public web tool at http:\/\/www.molnac.unisa.it\/BioTools\/cocomaps<\/jats:p>\n               <jats:p>Contact: \u00a0romina.oliva@uniparthenope.it; lcavallo@unisa.it<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr484","type":"journal-article","created":{"date-parts":[[2011,8,28]],"date-time":"2011-08-28T00:36:05Z","timestamp":1314491765000},"page":"2915-2916","source":"Crossref","is-referenced-by-count":262,"title":["COCOMAPS: a web application to analyze and visualize contacts at the interface of biomolecular complexes"],"prefix":"10.1093","volume":"27","author":[{"given":"Anna","family":"Vangone","sequence":"first","affiliation":[{"name":"1 Department of Chemistry and Biology, 2Dipartimento di Informatica ed Applicazioni, University of Salerno, 84084 Fisciano (SA) and 3Department of Applied Sciences, University \u2018Parthenope\u2019 of Naples, 80143 Naples, Italy"}]},{"given":"Raffaele","family":"Spinelli","sequence":"additional","affiliation":[{"name":"1 Department of Chemistry and Biology, 2Dipartimento di Informatica ed Applicazioni, University of Salerno, 84084 Fisciano (SA) and 3Department of Applied Sciences, University \u2018Parthenope\u2019 of Naples, 80143 Naples, Italy"}]},{"given":"Vittorio","family":"Scarano","sequence":"additional","affiliation":[{"name":"1 Department of Chemistry and Biology, 2Dipartimento di Informatica ed Applicazioni, University of Salerno, 84084 Fisciano (SA) and 3Department of Applied Sciences, University \u2018Parthenope\u2019 of Naples, 80143 Naples, Italy"}]},{"given":"Luigi","family":"Cavallo","sequence":"additional","affiliation":[{"name":"1 Department of Chemistry and Biology, 2Dipartimento di Informatica ed Applicazioni, University of Salerno, 84084 Fisciano (SA) and 3Department of Applied Sciences, University \u2018Parthenope\u2019 of Naples, 80143 Naples, Italy"}]},{"given":"Romina","family":"Oliva","sequence":"additional","affiliation":[{"name":"1 Department of Chemistry and Biology, 2Dipartimento di Informatica ed Applicazioni, University of Salerno, 84084 Fisciano (SA) and 3Department of Applied Sciences, University \u2018Parthenope\u2019 of Naples, 80143 Naples, Italy"}]}],"member":"286","published-online":{"date-parts":[[2011,8,27]]},"reference":[{"key":"2023012512012988500_B1","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The Protein Data Bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"2023012512012988500_B2","doi-asserted-by":"crossref","first-page":"1089","DOI":"10.1073\/pnas.91.3.1089","article-title":"Bound water molecules and conformational stabilization help mediate an antigen-antibody association","volume":"91","author":"Bhat","year":"1994","journal-title":"Proc. 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