{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,17]],"date-time":"2026-04-17T15:37:08Z","timestamp":1776440228424,"version":"3.51.2"},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1836,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: \u00a0pybedtools is a flexible Python software library for manipulating and exploring genomic datasets in many common formats. It provides an intuitive Python interface that extends upon the popular BEDTools genome arithmetic tools. The library is well documented and efficient, and allows researchers to quickly develop simple, yet powerful scripts that enable complex genomic analyses.<\/jats:p>\n               <jats:p>Availability: \u00a0pybedtools is maintained under the GPL license. Stable versions of pybedtools as well as documentation are available on the Python Package Index at http:\/\/pypi.python.org\/pypi\/pybedtools.<\/jats:p>\n               <jats:p>Contact: \u00a0dalerr@niddk.nih.gov; arq5x@virginia.edu<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr539","type":"journal-article","created":{"date-parts":[[2011,9,25]],"date-time":"2011-09-25T00:18:39Z","timestamp":1316909919000},"page":"3423-3424","source":"Crossref","is-referenced-by-count":521,"title":["Pybedtools: a flexible Python library for manipulating genomic datasets and annotations"],"prefix":"10.1093","volume":"27","author":[{"given":"Ryan K.","family":"Dale","sequence":"first","affiliation":[{"name":"1 Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, 2Department of Medicine, University of Colorado, Denver, Anschutz Medical Campus, Aurora, CO 80045 and 3Department of Public Health Sciences, Center for Public Health Genomics, University of Virginia, Charlottesville, VA 22908, USA"}]},{"given":"Brent S.","family":"Pedersen","sequence":"additional","affiliation":[{"name":"1 Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, 2Department of Medicine, University of Colorado, Denver, Anschutz Medical Campus, Aurora, CO 80045 and 3Department of Public Health Sciences, Center for Public Health Genomics, University of Virginia, Charlottesville, VA 22908, USA"}]},{"given":"Aaron R.","family":"Quinlan","sequence":"additional","affiliation":[{"name":"1 Laboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, 2Department of Medicine, University of Colorado, Denver, Anschutz Medical Campus, Aurora, CO 80045 and 3Department of Public Health Sciences, Center for Public Health Genomics, University of Virginia, Charlottesville, VA 22908, USA"}]}],"member":"286","published-online":{"date-parts":[[2011,9,23]]},"reference":[{"key":"2023012511313025600_B1","doi-asserted-by":"crossref","first-page":"1061","DOI":"10.1038\/nature09534","article-title":"A map of human genome variation from population-scale sequencing","volume":"467","author":"1000 Genomes Project Consortium et al.","year":"2010","journal-title":"Nature"},{"key":"2023012511313025600_B2","doi-asserted-by":"crossref","first-page":"2156","DOI":"10.1093\/bioinformatics\/btr330","article-title":"The Variant Call Format and VCFTools","volume":"27","author":"Danacek","year":"2011","journal-title":"Bioinformatics"},{"key":"2023012511313025600_B3","doi-asserted-by":"crossref","first-page":"e1001046","DOI":"10.1371\/journal.pbio.1001046","article-title":"A 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