{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,12]],"date-time":"2026-02-12T15:30:37Z","timestamp":1770910237947,"version":"3.50.1"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"23","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2011,12,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We introduce ProfileChaser, a web server that allows for querying the Gene Expression Omnibus based on genome-wide patterns of differential expression. Using a novel, content-based approach, ProfileChaser retrieves expression profiles that match the differentially regulated transcriptional programs in a user-supplied experiment. This analysis identifies statistical links to similar expression experiments from the vast array of publicly available data on diseases, drugs, phenotypes and other experimental conditions.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/profilechaser.stanford.edu<\/jats:p>\n               <jats:p>Contact: \u00a0abutte@stanford.edu<\/jats:p>\n               <jats:p>Supplementary Information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr548","type":"journal-article","created":{"date-parts":[[2011,10,4]],"date-time":"2011-10-04T03:14:50Z","timestamp":1317698090000},"page":"3317-3318","source":"Crossref","is-referenced-by-count":43,"title":["ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression"],"prefix":"10.1093","volume":"27","author":[{"given":"Jesse M.","family":"Engreitz","sequence":"first","affiliation":[{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rong","family":"Chen","sequence":"additional","affiliation":[{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alexander A.","family":"Morgan","sequence":"additional","affiliation":[{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Joel T.","family":"Dudley","sequence":"additional","affiliation":[{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rohan","family":"Mallelwar","sequence":"additional","affiliation":[{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Atul J.","family":"Butte","sequence":"additional","affiliation":[{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. Ltd, 1, Dnyanesh, CTS No. 1179\/3, Pune 411 005, India"},{"name":"1 Division of Systems Medicine, Department of Pediatrics, 2Department of Bioengineering, 3Lucile Packard Children's Hospital, 4Biomedical Informatics Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA and 5Optra Systems Pvt. 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