{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T07:23:11Z","timestamp":1761895391073},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1759,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>As microbial ecologists take advantage of high-throughput analytical techniques to describe microbial communities across ever-increasing numbers of samples, the need for new analysis tools that reveal the intrinsic spatial patterns and structures of these populations is crucial. Here we present SitePainter, an interactive graphical tool that allows investigators to create or upload pictures of their study site, load diversity analyses data and display both diversity and taxonomy results in a spatial context. Features of SitePainter include: visualizing \u03b1 -diversity, using taxonomic summaries; visualizing \u03b2 -diversity, using results from multidimensional scaling methods; and animating relationships among microbial taxa or pathways overtime. SitePainter thus increases the visual power and ability to explore spatially explicit studies.<\/jats:p>\n               <jats:p>Availability: \u00a0https:\/\/sourceforge.net\/projects\/sitepainter<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <jats:p>Contact: \u00a0antoniog@colorado.edu, Rob.Knight@colorado.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr685","type":"journal-article","created":{"date-parts":[[2011,12,11]],"date-time":"2011-12-11T01:23:20Z","timestamp":1323566600000},"page":"436-438","source":"Crossref","is-referenced-by-count":18,"title":["SitePainter: a tool for exploring biogeographical patterns"],"prefix":"10.1093","volume":"28","author":[{"given":"Antonio","family":"Gonzalez","sequence":"first","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"}]},{"given":"Jesse","family":"Stombaugh","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"}]},{"given":"Christian L.","family":"Lauber","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"},{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"}]},{"given":"Noah","family":"Fierer","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"},{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"}]},{"given":"Rob","family":"Knight","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"},{"name":"1 Department of Computer Science, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder and 5Howard Hughes Medical Institute, Boulder, CO 80309, USA"}]}],"member":"286","published-online":{"date-parts":[[2011,12,9]]},"reference":[{"key":"2023012512165919600_B1","doi-asserted-by":"crossref","first-page":"299","DOI":"10.1073\/pnas.0608255104","article-title":"Urban aerosols harbor diverse and dynamic bacterial populations","volume":"104","author":"Brodie","year":"2007","journal-title":"Proc. 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