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CLARE's model also provides a detailed analysis of transcription factors that most likely bind to the elements, making it an invaluable tool for understanding mechanisms of tissue-specific gene regulation.<\/jats:p><jats:p>Availability: CLARE is freely accessible at http:\/\/clare.dcode.org\/.<\/jats:p><jats:p>Contact: \u00a0taherl@ncbi.nlm.nih.gov; ovcharen@nih.gov<\/jats:p><jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr704","type":"journal-article","created":{"date-parts":[[2011,12,24]],"date-time":"2011-12-24T02:37:52Z","timestamp":1324694272000},"page":"581-583","source":"Crossref","is-referenced-by-count":14,"title":["CLARE: Cracking the LAnguage of Regulatory Elements"],"prefix":"10.1093","volume":"28","author":[{"given":"Leila","family":"Taher","sequence":"first","affiliation":[{"name":"1 Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MA 20894, USA and 2Chemical Engineering and Process Development Division, National Chemical Laboratory, CSIR, Pune 411008, India"}]},{"given":"Leelavati","family":"Narlikar","sequence":"additional","affiliation":[{"name":"1 Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MA 20894, USA and 2Chemical Engineering and Process Development Division, National Chemical Laboratory, CSIR, Pune 411008, India"}]},{"given":"Ivan","family":"Ovcharenko","sequence":"additional","affiliation":[{"name":"1 Computational Biology Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MA 20894, USA and 2Chemical Engineering and Process Development Division, National Chemical Laboratory, CSIR, Pune 411008, India"}]}],"member":"286","published-online":{"date-parts":[[2011,12,22]]},"reference":[{"key":"2023012512182948100_B1","doi-asserted-by":"crossref","first-page":"806","DOI":"10.1038\/ng.650","article-title":"ChIP-Seq identification of weakly conserved heart enhancers","volume":"42","author":"Blow","year":"2010","journal-title":"Nat. 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