{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,6]],"date-time":"2026-01-06T13:35:32Z","timestamp":1767706532704},"reference-count":3,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1738,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: CytoSEED is a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created using the Model SEED. The CytoSEED plugin enables users of the Model SEED to create informative visualizations of the reaction networks generated for their organisms of interest. These visualizations are useful for understanding organism-specific biochemistry and for highlighting the results of flux variability analysis experiments.<\/jats:p>\n               <jats:p>Availability and Implementation: Freely available for download on the web at http:\/\/sourceforge.net\/projects\/cytoseed\/. Implemented in Java SE 6 and supported on all platforms that support Cytoscape.<\/jats:p>\n               <jats:p>Contact: \u00a0dejongh@hope.edu<\/jats:p>\n               <jats:p>Supplementary information: Installation instructions, a tutorial, and full-size figures are available at http:\/\/www.cs.hope.edu\/cytoseed\/.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btr719","type":"journal-article","created":{"date-parts":[[2012,1,1]],"date-time":"2012-01-01T01:24:24Z","timestamp":1325381064000},"page":"891-892","source":"Crossref","is-referenced-by-count":11,"title":["CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED"],"prefix":"10.1093","volume":"28","author":[{"given":"Matthew","family":"DeJongh","sequence":"first","affiliation":[{"name":"Computer Science Department, Hope College, Holland, Michigan, 49423, USA"}]},{"given":"Benjamin","family":"Bockstege","sequence":"additional","affiliation":[{"name":"Computer Science Department, Hope College, Holland, Michigan, 49423, USA"}]},{"given":"Paul","family":"Frybarger","sequence":"additional","affiliation":[{"name":"Computer Science Department, Hope College, Holland, Michigan, 49423, USA"}]},{"given":"Nicholas","family":"Hazekamp","sequence":"additional","affiliation":[{"name":"Computer Science Department, Hope College, Holland, Michigan, 49423, USA"}]},{"given":"Joshua","family":"Kammeraad","sequence":"additional","affiliation":[{"name":"Computer Science Department, Hope College, Holland, Michigan, 49423, USA"}]},{"given":"Travis","family":"McGeehan","sequence":"additional","affiliation":[{"name":"Computer Science Department, Hope College, Holland, Michigan, 49423, USA"}]}],"member":"286","published-online":{"date-parts":[[2011,12,30]]},"reference":[{"key":"2023012512222934300_B1","doi-asserted-by":"crossref","first-page":"977","DOI":"10.1038\/nbt.1672","article-title":"High-throughput generation, optimization and analysis of genome-scale metabolic models","volume":"28","author":"Henry","year":"2010","journal-title":"Nat. Biotech."},{"key":"2023012512222934300_B2","doi-asserted-by":"crossref","first-page":"D354","DOI":"10.1093\/nar\/gkj102","article-title":"From genomics to chemical genomics: new developments in KEGG","volume":"34","author":"Kanehisa","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"2023012512222934300_B3","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/28\/6\/891\/48881856\/bioinformatics_28_6_891.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/28\/6\/891\/48881856\/bioinformatics_28_6_891.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T15:51:31Z","timestamp":1674661891000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/28\/6\/891\/310376"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2011,12,30]]},"references-count":3,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2012,3,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btr719","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2012,3,15]]},"published":{"date-parts":[[2011,12,30]]}}}