{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,26]],"date-time":"2023-01-26T05:20:51Z","timestamp":1674710451992},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1726,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Co-crystallization experiments of proteins with nucleic acids do not guarantee that both components are present in the crystal. We have previously developed DIBER to predict crystal content when protein and DNA are present in the crystallization mix. Here, we present RIBER, which should be used when protein and RNA are in the crystallization drop. The combined RIBER\/DIBER suite builds on machine learning techniques to make reliable, quantitative predictions of crystal content for non-expert users and high-throughput crystallography.<\/jats:p>\n               <jats:p>Availability: The program source code, Linux binaries and a web server are available at http:\/\/diber.iimcb.gov.pl\/ RIBER\/DIBER requires diffraction data to at least 3.0 \u00c5 resolution in MTZ or CIF (web server only) format. The RIBER\/DIBER code is subject to the GNU Public License.<\/jats:p>\n               <jats:p>Contact: \u00a0gchojnowski@genesilico.pl<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts003","type":"journal-article","created":{"date-parts":[[2012,1,12]],"date-time":"2012-01-12T03:10:30Z","timestamp":1326337830000},"page":"880-881","source":"Crossref","is-referenced-by-count":4,"title":["RIBER\/DIBER: a software suite for crystal content analysis in the studies of protein\u2013nucleic acid complexes"],"prefix":"10.1093","volume":"28","author":[{"given":"Grzegorz","family":"Chojnowski","sequence":"first","affiliation":[{"name":"1 International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, 2Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan and 3Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warsaw, Poland"}]},{"given":"Janusz M.","family":"Bujnicki","sequence":"additional","affiliation":[{"name":"1 International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, 2Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan and 3Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warsaw, Poland"},{"name":"1 International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, 2Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan and 3Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warsaw, Poland"}]},{"given":"Matthias","family":"Bochtler","sequence":"additional","affiliation":[{"name":"1 International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, 2Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan and 3Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warsaw, Poland"},{"name":"1 International Institute of Molecular and Cell Biology, Trojdena 4, 02-109 Warsaw, 2Institute of Molecular Biology and Biotechnology, Adam Mickiewicz University, Umultowska 89, 61-614 Poznan and 3Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106 Warsaw, Poland"}]}],"member":"286","published-online":{"date-parts":[[2012,1,11]]},"reference":[{"key":"2023012512195307600_B1","doi-asserted-by":"crossref","first-page":"319","DOI":"10.1111\/j.1432-1033.1977.tb11885.x","article-title":"Protein Data Bank - computer-based archival file for macromolecular structures","volume":"80","author":"Bernstein","year":"1977","journal-title":"Eur. 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