{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,26]],"date-time":"2023-01-26T05:20:52Z","timestamp":1674710452517},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1691,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: \u00a0CytoSaddleSum provides Cytoscape users with access to the functionality of SaddleSum, a functional enrichment tool based on sum-of-weight scores. It operates by querying SaddleSum locally (using the standalone version) or remotely (through an HTTP request to a web server). The functional enrichment results are shown as a term relationship network, where nodes represent terms and edges show term relationships. Furthermore, query results are written as Cytoscape attributes allowing easy saving, retrieval and integration into network-based data analysis workflows.<\/jats:p>\n               <jats:p>Availability: \u00a0www.ncbi.nlm.nih.gov\/CBBresearch\/Yu\/downloads.html The source code is placed in Public Domain.<\/jats:p>\n               <jats:p>Contact: \u00a0yyu@ncbi.nlm.nih.gov<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary materials are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts041","type":"journal-article","created":{"date-parts":[[2012,2,17]],"date-time":"2012-02-17T01:54:18Z","timestamp":1329443658000},"page":"893-894","source":"Crossref","is-referenced-by-count":4,"title":["CytoSaddleSum: a functional enrichment analysis plugin for Cytoscape based on sum-of-weights scores"],"prefix":"10.1093","volume":"28","author":[{"given":"Aleksandar","family":"Stojmirovi\u0107","sequence":"first","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}]},{"given":"Alexander","family":"Bliskovsky","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}]},{"given":"Yi-Kuo","family":"Yu","sequence":"additional","affiliation":[{"name":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"}]}],"member":"286","published-online":{"date-parts":[[2012,2,15]]},"reference":[{"key":"2023012512221786600_B1","doi-asserted-by":"crossref","first-page":"D331","DOI":"10.1093\/nar\/gkp1018","article-title":"The gene ontology in 2010: extensions and refinements","volume":"38","author":"Gene Ontology Consortium","year":"2010","journal-title":"Nucleic Acids Res."},{"key":"2023012512221786600_B2","doi-asserted-by":"crossref","first-page":"D480","DOI":"10.1093\/nar\/gkm882","article-title":"KEGG for linking genomes to life and the environment","volume":"36","author":"Kanehisa","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"2023012512221786600_B3","doi-asserted-by":"crossref","first-page":"475","DOI":"10.2307\/1426607","article-title":"Saddle point approximation for the distribution of the sum of independent random variables","volume":"12","author":"Lugannani","year":"1980","journal-title":"Adv. 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