{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,4]],"date-time":"2025-11-04T23:10:33Z","timestamp":1762297833841},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1662,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: This website allows the detection of horizontal transfers based on a combination of parametric methods and proposes an origin by researching neighbors in a bank of genomic signatures. This bank is also used to research an origin to DNA fragments from metagenomics studies.<\/jats:p>\n               <jats:p>Results: Different services are provided like the possibility of inferring a phylogenetic tree with sequence signatures or comparing two genomes and displaying the rearrangements that happened since their separation.<\/jats:p>\n               <jats:p>Availability and implementation: \u00a0http:\/\/gohtam.rpbs.univ-paris-diderot.fr\/<\/jats:p>\n               <jats:p>Contact: \u00a0patrick.deschavanne@univ-paris-diderot.fr; ludovic.mallet@jouy.inra.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online http:\/\/gohtam.rpbs.univ-paris-diderot.fr:8080\/Data\/bin\/GOHTAM_bin.tgz<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts118","type":"journal-article","created":{"date-parts":[[2012,3,17]],"date-time":"2012-03-17T00:32:05Z","timestamp":1331944325000},"page":"1270-1271","source":"Crossref","is-referenced-by-count":22,"title":["GOHTAM: a website for \u2018Genomic Origin of Horizontal Transfers, Alignment and Metagenomics\u2019"],"prefix":"10.1093","volume":"28","author":[{"given":"Sabine","family":"M\u00e9nigaud","sequence":"first","affiliation":[{"name":"Mol\u00e9cules Th\u00e9rapeutiques in silico, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) UMR-S 973, Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, 35 rue H\u00e9l\u00e9ne Brion, 75013, Paris, France"}]},{"given":"Ludovic","family":"Mallet","sequence":"additional","affiliation":[{"name":"Mol\u00e9cules Th\u00e9rapeutiques in silico, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) UMR-S 973, Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, 35 rue H\u00e9l\u00e9ne Brion, 75013, Paris, France"}]},{"given":"G\u00e9raldine","family":"Picord","sequence":"additional","affiliation":[{"name":"Mol\u00e9cules Th\u00e9rapeutiques in silico, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) UMR-S 973, Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, 35 rue H\u00e9l\u00e9ne Brion, 75013, Paris, France"}]},{"given":"C\u00e9cile","family":"Churlaud","sequence":"additional","affiliation":[{"name":"Mol\u00e9cules Th\u00e9rapeutiques in silico, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) UMR-S 973, Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, 35 rue H\u00e9l\u00e9ne Brion, 75013, Paris, France"}]},{"given":"Alexandre","family":"Borrel","sequence":"additional","affiliation":[{"name":"Mol\u00e9cules Th\u00e9rapeutiques in silico, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) UMR-S 973, Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, 35 rue H\u00e9l\u00e9ne Brion, 75013, Paris, France"}]},{"given":"Patrick","family":"Deschavanne","sequence":"additional","affiliation":[{"name":"Mol\u00e9cules Th\u00e9rapeutiques in silico, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale (INSERM) UMR-S 973, Universit\u00e9 Paris Diderot, Sorbonne Paris Cit\u00e9, 35 rue H\u00e9l\u00e9ne Brion, 75013, Paris, France"}]}],"member":"286","published-online":{"date-parts":[[2012,3,15]]},"reference":[{"key":"2023012512230122100_B1","doi-asserted-by":"crossref","first-page":"4629","DOI":"10.1093\/nar\/gkm204","article-title":"Detecting laterally transferred genes: use of entropic clustering methods and genome position","volume":"35","author":"Azad","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"2023012512230122100_B2","doi-asserted-by":"crossref","first-page":"e9989","DOI":"10.1371\/journal.pone.0009989","article-title":"A benchmark of parametric methods for horizontal transfers detection","volume":"5","author":"Becq","year":"2010","journal-title":"PLoS ONE"},{"key":"2023012512230122100_B3","doi-asserted-by":"crossref","first-page":"63","DOI":"10.1186\/1471-2148-5-63","article-title":"Exploration of phylogenetic data using a global sequence analysis method","volume":"5","author":"Chapus","year":"2005","journal-title":"BMC Evol. 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