{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T21:11:57Z","timestamp":1761513117979},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Transcription and chromatin regulators, and histone modifications play essential roles in gene expression regulation. We have created CistromeMap as a web server to provide a comprehensive knowledgebase of all of the publicly available ChIP-Seq and DNase-Seq data in mouse and human. We have also manually curated metadata to ensure annotation consistency, and developed a user-friendly display matrix for quick navigation and retrieval of data for specific factors, cells and papers. Finally, we provide users with summary statistics of ChIP-Seq and DNase-Seq studies.<\/jats:p>\n               <jats:p>Availability: Freely available on the web at http:\/\/cistrome.dfci.harvard.edu\/pc\/<\/jats:p>\n               <jats:p>Contact: \u00a0yzhang@tongji.edu.cn; xsliu@jimmy.harvard.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts157","type":"journal-article","created":{"date-parts":[[2012,4,12]],"date-time":"2012-04-12T05:16:27Z","timestamp":1334207787000},"page":"1411-1412","source":"Crossref","is-referenced-by-count":31,"title":["CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human"],"prefix":"10.1093","volume":"28","author":[{"given":"Bo","family":"Qin","sequence":"first","affiliation":[{"name":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China, 2Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90089, 3Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 4Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Ave, Boston, MA, 02115, USA, 5Department of Information Technology, China Novartis Institutes for BioMedical Research Co.,Ltd., Shanghai 201203, China and 6Division of Biostatistics, Dan L Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Meng","family":"Zhou","sequence":"additional","affiliation":[{"name":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China, 2Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90089, 3Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 4Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Ave, Boston, MA, 02115, USA, 5Department of Information Technology, China Novartis Institutes for BioMedical Research Co.,Ltd., Shanghai 201203, China and 6Division of Biostatistics, Dan L Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ying","family":"Ge","sequence":"additional","affiliation":[{"name":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China, 2Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90089, 3Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 4Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Ave, Boston, MA, 02115, USA, 5Department of Information Technology, China Novartis Institutes for BioMedical Research Co.,Ltd., Shanghai 201203, China and 6Division of Biostatistics, Dan L Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Len","family":"Taing","sequence":"additional","affiliation":[{"name":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China, 2Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90089, 3Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 4Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Ave, Boston, MA, 02115, USA, 5Department of Information Technology, China Novartis Institutes for BioMedical Research Co.,Ltd., Shanghai 201203, China and 6Division of Biostatistics, Dan L Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA"},{"name":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China, 2Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90089, 3Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 4Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Ave, Boston, MA, 02115, USA, 5Department of Information Technology, China Novartis Institutes for BioMedical Research Co.,Ltd., Shanghai 201203, China and 6Division of Biostatistics, Dan L Duncan Cancer Center and Department of Molecular and Cellular Biology, Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Tao","family":"Liu","sequence":"additional","affiliation":[{"name":"1 Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, 200092, China, 2Department of Biological Sciences, Dana and David Dornsife College of Letters, Arts and Sciences, University of Southern California, Los Angeles, CA 90089, 3Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, 4Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, 450 Brookline Ave, Boston, MA, 02115, USA, 5Department of Information Technology, China Novartis Institutes for BioMedical Research Co.,Ltd., 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