{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,25]],"date-time":"2026-02-25T04:19:40Z","timestamp":1771993180995,"version":"3.50.1"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"11","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1640,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispersion measure and the contribution measure, were introduced and implemented in PaGeFinder to help quantitative and interactive identification of pattern genes like housekeeping genes, specific (selective) genes and repressed genes. Besides the on-line computation service, the PaGeFinder also provides downloadable Java programs for local detection of gene expression patterns.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/bioinf.xmu.edu.cn:8080\/PaGeFinder\/index.jsp<\/jats:p>\n               <jats:p>Contact: \u00a0appo@xmu.edu.cn; zouquan@xmu.edu.cn<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts169","type":"journal-article","created":{"date-parts":[[2012,4,8]],"date-time":"2012-04-08T08:06:13Z","timestamp":1333872373000},"page":"1544-1545","source":"Crossref","is-referenced-by-count":52,"title":["PaGeFinder: quantitative identification of spatiotemporal pattern genes"],"prefix":"10.1093","volume":"28","author":[{"given":"Jian-Bo","family":"Pan","sequence":"first","affiliation":[{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"},{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"}]},{"given":"Shi-Chang","family":"Hu","sequence":"additional","affiliation":[{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"}]},{"given":"Hao","family":"Wang","sequence":"additional","affiliation":[{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"}]},{"given":"Quan","family":"Zou","sequence":"additional","affiliation":[{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"}]},{"given":"Zhi-Liang","family":"Ji","sequence":"additional","affiliation":[{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"},{"name":"1 Department of Chemical Biology, College of Chemistry and Chemical Engineering, The Key Laboratory for Chemical Biology of Fujian Province, 2State Key Laboratory of Stress Cell Biology, School of Life Sciences, and 3School of Information Science and Technology, Xiamen University, Xiamen 361005, Fujian, P R China"}]}],"member":"286","published-online":{"date-parts":[[2012,4,6]]},"reference":[{"key":"2023012512313237400_B1","doi-asserted-by":"crossref","first-page":"e22859","DOI":"10.1371\/journal.pone.0022859","article-title":"Identification of human housekeeping genes and tissue-selective genes by microarray meta-analysis","volume":"6","author":"Chang","year":"2011","journal-title":"PLoS One"},{"key":"2023012512313237400_B2","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1186\/1471-2164-7-277","article-title":"Mining housekeeping genes with a Naive Bayes classifier","volume":"7","author":"De Ferrari","year":"2006","journal-title":"BMC Genomics"},{"key":"2023012512313237400_B3","doi-asserted-by":"crossref","first-page":"e21012","DOI":"10.1371\/journal.pone.0021012","article-title":"Predicting housekeeping genes based on Fourier analysis","volume":"6","author":"Dong","year":"2011","journal-title":"PLoS One"},{"key":"2023012512313237400_B4","doi-asserted-by":"crossref","first-page":"20870","DOI":"10.1073\/pnas.0810772105","article-title":"A large-scale analysis of tissue-specific pathology and gene expression of human disease genes and complexes","volume":"105","author":"Lage","year":"2008","journal-title":"Proc. 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