{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,23]],"date-time":"2025-11-23T20:56:24Z","timestamp":1763931384213},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"12","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1613,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,6,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivations: Spreadsheet-like tabular formats are ever more popular in the biomedical field as a mean for experimental reporting. The problem of converting the graph of an experimental workflow into a table-based representation occurs in many such formats and is not easy to solve.<\/jats:p>\n               <jats:p>Results: We describe graph2tab, a library that implements methods to realise such a conversion in a size-optimised way. Our solution is generic and can be adapted to specific cases of data exporters or data converters that need to be implemented.<\/jats:p>\n               <jats:p>Availability and Implementation: The library source code and documentation are available at http:\/\/github.com\/ISA-tools\/graph2tab.<\/jats:p>\n               <jats:p>Contact: \u00a0brandizi@ebi.ac.uk.<\/jats:p>\n               <jats:p>Supplementary Information: A supplementary document describes the theoretical and technical details about the library implementation.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts258","type":"journal-article","created":{"date-parts":[[2012,5,4]],"date-time":"2012-05-04T00:59:48Z","timestamp":1336093188000},"page":"1665-1667","source":"Crossref","is-referenced-by-count":7,"title":["graph2tab, a library to convert experimental workflow graphs into tabular formats"],"prefix":"10.1093","volume":"28","author":[{"given":"Marco","family":"Brandizi","sequence":"first","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"}]},{"given":"Natalja","family":"Kurbatova","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"}]},{"given":"Ugis","family":"Sarkans","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"}]},{"given":"Philippe","family":"Rocca-Serra","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD and 2Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK"}]}],"member":"286","published-online":{"date-parts":[[2012,5,3]]},"reference":[{"key":"2023012512341172000_B1","doi-asserted-by":"crossref","first-page":"53","DOI":"10.1007\/BF02935746","article-title":"Sequential and parallel algorithms for minimum flows","volume":"15","author":"Ciurea","year":"2004","journal-title":"Korean J. 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