{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,12,27]],"date-time":"2025-12-27T04:33:21Z","timestamp":1766810001678},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"15","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":1606,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/3.0"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2012,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: LibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner.<\/jats:p>\n               <jats:p>Availability and implementation: Milestone 2 was released in December 2011. Source code, example files and binaries are freely available under the terms of either the LGPL v2.1+ or Apache v2.0 open source licenses from http:\/\/libsbgn.sourceforge.net.<\/jats:p>\n               <jats:p>Contact: \u00a0sbgn-libsbgn@lists.sourceforge.net<\/jats:p>","DOI":"10.1093\/bioinformatics\/bts270","type":"journal-article","created":{"date-parts":[[2012,5,12]],"date-time":"2012-05-12T01:02:48Z","timestamp":1336784568000},"page":"2016-2021","source":"Crossref","is-referenced-by-count":69,"title":["Software support for SBGN maps: SBGN-ML and LibSBGN"],"prefix":"10.1093","volume":"28","author":[{"given":"Martijn P.","family":"van Iersel","sequence":"first","affiliation":[{"name":"1 EMBL European Bioinformatics Institute, Hinxton, UK, 2Netherlands Consortium for Systems Biology (NCSB), Amsterdam, 3Department of Bioinformatics - BiGCaT, University of Maastricht, Maastricht, The Netherlands, 4School of Computer Science, Faculty of Engineering and Physical Sciences, University of Manchester, Manchester, UK, 5Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, 6School of Mathematical Sciences, Faculty of Science, Monash University, Melbourne, Australia, 7Control and Dynamical Systems, California Institute of Technology, Pasadena, CA, 8National Cancer Institute, Bethesda, MD, 9Bioinformatics Program, Boston University, Boston, MA, 10Computational Biology, Memorial Sloan Kettering Cancer Center, New York, NY, USA, 11Institute of Cell Biophysics RAS, Puschino, Russia, 12Computer Engineering Department, Bilkent University, Ankara, Turkey, 13The Systems Biology Institute, Tokyo, 14Department of Biosciences and Informatics, Keio University, Yokohama, Japan,"},{"name":"1 EMBL European Bioinformatics Institute, Hinxton, UK, 2Netherlands Consortium for Systems Biology (NCSB), Amsterdam, 3Department of Bioinformatics - BiGCaT, University of Maastricht, Maastricht, The Netherlands, 4School of Computer Science, Faculty of Engineering and Physical Sciences, University of Manchester, Manchester, UK, 5Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, 6School of Mathematical Sciences, Faculty of Science, Monash University, Melbourne, Australia, 7Control and Dynamical Systems, California Institute of Technology, Pasadena, CA, 8National Cancer Institute, Bethesda, MD, 9Bioinformatics Program, Boston University, Boston, MA, 10Computational Biology, Memorial Sloan Kettering Cancer Center, New York, NY, USA, 11Institute of Cell Biophysics RAS, Puschino, Russia, 12Computer Engineering Department, Bilkent University, Ankara, Turkey, 13The Systems Biology Institute, Tokyo, 14Department of Biosciences and Informatics, Keio University, Yokohama, Japan,"},{"name":"1 EMBL European Bioinformatics Institute, Hinxton, UK, 2Netherlands Consortium for Systems Biology (NCSB), Amsterdam, 3Department of Bioinformatics - BiGCaT, University of Maastricht, Maastricht, The Netherlands, 4School of Computer Science, Faculty of Engineering and Physical Sciences, University of Manchester, Manchester, UK, 5Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Gatersleben, Germany, 6School of Mathematical Sciences, Faculty of Science, Monash University, Melbourne, Australia, 7Control and Dynamical Systems, California Institute of Technology, Pasadena, CA, 8National Cancer Institute, Bethesda, MD, 9Bioinformatics Program, Boston University, Boston, MA, 10Computational Biology, Memorial Sloan Kettering Cancer Center, New York, NY, USA, 11Institute of Cell Biophysics RAS, Puschino, Russia, 12Computer Engineering Department, Bilkent University, Ankara, Turkey, 13The Systems Biology Institute, Tokyo, 14Department of Biosciences and Informatics, Keio University, Yokohama, Japan,"}]},{"given":"Alice C.","family":"Vill\u00e9ger","sequence":"additional","affiliation":[{"name":"1 EMBL European Bioinformatics Institute, Hinxton, UK, 2Netherlands Consortium for Systems Biology (NCSB), Amsterdam, 3Department of Bioinformatics - 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